YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|31874036
Organism:	Homo sapiens
Length:	345 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|31874036.

Description	E-value	Query Range	Subject Range
gi\|114599207 - gi\|114599207\|ref\|XP_517659.2\| PREDICTED: hypothetical protein [Pan troglodytes]	0.0	[2..345]	[118..461]
gi\|109078012 - gi\|109078012\|ref\|XP_001086208.1\| PREDICTED: similar to LysM, putative peptidoglycan-binding, domain ...	0.0	[2..345]	[72..415]
LYSMD3 - LysM, putative peptidoglycan-binding, domain containing 3	0.0	[40..345]	[1..306]
LYSM3_MOUSE - LysM and putative peptidoglycan-binding domain-containing protein 3 OS=Mus musculus GN=Lysmd3 PE=2 S...	0.0	[40..345]	[1..305]
gi\|76660080 - gi\|76660080\|ref\|XP_869935.1\| PREDICTED: hypothetical protein [Bos taurus]	0.0	[40..345]	[79..384]
LYSM3_RAT - LysM and putative peptidoglycan-binding domain-containing protein 3 OS=Rattus norvegicus GN=Lysmd3 P...	0.0	[40..340]	[1..300]
gi\|73952301 - gi\|73952301\|ref\|XP_546030.2\| PREDICTED: similar to LysM, putative peptidoglycan-binding, domain cont...	2.0E-97	[40..345]	[1..305]
LYSM3_CHICK - LysM and putative peptidoglycan-binding domain-containing protein 3 OS=Gallus gallus GN=LYSMD3 PE=2 ...	2.0E-61	[78..338]	[38..292]

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Predicted Domain #1

Region A:
Residues: [1-95]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GVSPKQRLGH ELTRDSGGGG PFGHLLAECS LLTGTDFNIM AGRHQNRSFP LPGVQSSGQV  60
   61 HAFGNCSDSD ILEEDAEVYE LRSRGKEKVR RSTSR

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [96-212]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DRLDDIIVLT KDIQEGDTLN AIALQYCCTV ADIKRVNNLI SDQDFFALRS IKIPVKKFSS  60
   61 LTETLCPPKG RQTSRHSSVQ YSSEQQEILP ANDSLAYSDS AGSFLKEVDR DIEQIVK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	6.0
Match:	1y7mA
Description:	Crystal Structure of the B. subtilis YkuD protein at 2 A resolution
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [213-345]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CTDNKRENLN EVVSALTAQQ MRFEPDNKNT QRKDPYYGAD WGIGWWTAVV IMLIVGIITP  60
   61 VFYLLYYEIL AKVDVSHHST VDSSHLHSKI TPPSQQREME NGIVPTKGIH FSQQDDHKLY 120
  121 SQDSQSPAAQ QET

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits