YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|49258951
Organism:	Homo sapiens
Length:	106 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|49258951.

Description	E-value	Query Range	Subject Range
gi\|104549 - gi\|104549\|pir\|\|A32575 C-ski protein FB29 - chicken	187.0	[0..2]	[106..71]
gi\|1890290, gi\|1... - gi\|1890290\|gb\|AAB49722.1\| Ski2 [Xenopus laevis], gi\|148231043\|ref\|NP_001084112.1\| Ski2 [Xenopus laev...	186.0	[0..1]	[106..70]
gi\|68921 - pir\|\|TVFVSK transforming protein ski - avian erythroblastosis virus (strain Sloan-Kettering) SKI_AVIES - Transforming protein Ski OS=Avian erythroblastosis virus (strain Sloan-Kettering) GN=V-SKI PE=1 SV=1	185.0	[0..2]	[106..50]
gi\|123298533, gi... - gi\|148683050\|gb\|EDL14997.1\| Sloan-Kettering viral oncogene homolog [Mus musculus], gi\|123298533\|emb\|...	182.0	[0..5]	[106..91]

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Predicted Domain #1

Region A:
Residues: [1-106]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSHXFXPSDR STERCETVLE GETISCFVVG GEKRLCLPQI LNSVLRDFSL QQINAVCDEL  60
   61 HIYCSRCTAD QLEILKVXGI LPFSAPSCGL ITKTDAERLC NALLYG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	43.522879
Match:	1sbxA
Description:	Crystal structure of the Dachshund-homology domain of human SKI
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits