YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|190404774
Organism:	Saccharomyces cerevisiae RM11-1a
Length:	414 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|190404774.

Description	E-value	Query Range	Subject Range
gi\|207346499 - gi\|207346499\|gb\|EDZ72978.1\| YDR282Cp-like protein [Saccharomyces cerevisiae AWRI1631] gi\|190404774 - gi\|190404774\|gb\|EDV08041.1\| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a] MRX10_YEAST - MIOREX complex component 10 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MRX10 PE=1 S... YDR282C - Putative protein of unknown function gi\|151942255 - gi\|151942255\|gb\|EDN60611.1\| conserved protein [Saccharomyces cerevisiae YJM789]	0.0	[1..414]	[1..414]
gi\|8923584, gi\|7... - gi\|8923584\|ref\|NP_060379.1\| required for meiotic nuclear division 1 homolog [Homo sapiens], gi\|70208...	0.0	[39..395]	[114..448]
gi\|18043967 - gi\|18043967\|gb\|AAH19572.1\| Rmnd1 protein [Mus musculus]	1.0E-78	[121..395]	[1..262]
gi\|76167738, gi\|... - gi\|76789208\|ref\|YP_328294.1\| hypothetical protein CTA_0518 [Chlamydia trachomatis A/HAR-13], gi\|7616... gi\|255311285 - gi\|255311285\|ref\|ZP_05353855.1\| hypothetical protein Ctra62_02470 [Chlamydia trachomatis 6276] gi\|255317587 - gi\|255317587\|ref\|ZP_05358833.1\| hypothetical protein Ctra6_02465 [Chlamydia trachomatis 6276s] gi\|15605199, gi\|... - gi\|3328907\|gb\|AAC68072.1\| hypothetical protein CT_472 [Chlamydia trachomatis D/UW-3/CX], gi\|15605199... gi\|7468737, gi\|2... - pir\|\|E71509 hypothetical protein CT472 - Chlamydia trachomatis (serotype D, strain UW3/Cx), gi\|23780... gi\|237802900, gi... - gi\|237802900\|ref\|YP_002888094.1\| hypothetical protein JALI_4741 [Chlamydia trachomatis], gi\|23127413...	4.0E-77	[106..392]	[2..257]
gi\|25351710 - pir\|\|A97787 hypothetical protein RC0697 [imported] - Rickettsia conorii (strain Malish 7) gi\|15892620, gi\|... - gi\|15892620\|ref\|NP_360334.1\| hypothetical protein RC0697 [Rickettsia conorii str. Malish 7], gi\|1561...	1.0E-74	[106..393]	[2..265]
gi\|15835371, gi\|... - gi\|7190783\|gb\|AAF39561.1\| conserved hypothetical protein [Chlamydia muridarum Nigg], gi\|15835371\|ref... gi\|11282246, gi\|... - gi\|7190783\|gb\|AAF39561.1\| conserved hypothetical protein [Chlamydia muridarum Nigg], gi\|15835371\|ref...	3.0E-74	[106..392]	[2..257]
gi\|3861019, gi\|7... - pir\|\|E71705 hypothetical protein RP463 - Rickettsia prowazekii, gi\|3861019\|emb\|CAA14919.1\| unknown [... gi\|15604327 - gi\|15604327\|ref\|NP_220843.1\| hypothetical protein RP463 [Rickettsia prowazekii str. Madrid E]	2.0E-71	[106..393]	[2..265]
gi\|19074555 - gi\|19074555\|ref\|NP_586061.1\| similarity to HYPOTHETICAL TRANSMEMBRANE PROTEIN YAGE_SCHPO [Encephalit... gi\|19074555, gi\|... - gi\|19074555\|ref\|NP_586061.1\| similarity to HYPOTHETICAL TRANSMEMBRANE PROTEIN YAGE_SCHPO [Encephalit...	2.0E-68	[94..387]	[50..315]
gi\|22022566, gi\|... - gi\|9758026\|dbj\|BAB08687.1\| unnamed protein product [Arabidopsis thaliana], gi\|23308429\|gb\|AAN18184.1...	7.0E-67	[81..393]	[92..396]

Back

Predicted Domain #1

Region A:
Residues: [1-90]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSFRSLTST FGFVSRFQIR RLGTSLSIQN LEVQDGRWKG KLATEKKTNR EHKSVDTNIK  60
   61 TMKMLKNPKN STRYLRRSFV PNHRKQENGR

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [91-414]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DILEDSLSKD HLKVKSCITI TTGEGYDLKR CMKLLTMQGL QPTNLIPDEI VSFSYQDNGN  60
   61 KGDVMILGQN GSIVSWGFSE SSVRNCIVPI VKAASLNPLN GEDFETEDMD YVEIEGEQDF 120
  121 DKLSSLDNKV TPRIACESFL SGDLIIINSL DSDQGMLDKA AFSSGLSRST NLAVLEEAME 180
  181 KHISKTRTIT ENISKGTKLN LRSSDALKSI GRLFLIRGKL NLYSELIETP DLYWSEPQLE 240
  241 EIFKNVSRYL DIGPRINILN SKLDYSTDEC RALISLLNER NSTFLEWIII YLIAFELCFE 300
  301 IYHFYQKYSS YCSEPTNDDL DATK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	150.537602
Match:	PF02582
Description:	Uncharacterised ACR, YagE family COG1723

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [257-414]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SRSTNLAVLE EAMEKHISKT RTITENISKG TKLNLRSSDA LKSIGRLFLI RGKLNLYSEL  60
   61 IETPDLYWSE PQLEEIFKNV SRYLDIGPRI NILNSKLDYS TDECRALISL LNERNSTFLE 120
  121 WIIIYLIAFE LCFEIYHFYQ KYSSYCSEPT NDDLDATK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits