YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|49258601, gi\|...
Organism:	Escherichia coli
Length:	307 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|49258601, gi|....

Description	E-value	Query Range	Subject Range
gi\|169888970, gi... - gi\|170081135\|ref\|YP_001730455.1\| hypothetical protein ECDH10B_1595 [Escherichia coli str. K-12 subst... YDDE_ECOLI - Uncharacterized isomerase yddE (EC 5.1.-.-) (ORFB) - Escherichia coli gi\|238900688, gi... - gi\|238900688\|ref\|YP_002926484.1\| hypothetical protein BWG_1287 [Escherichia coli BW2952], gi\|2388603... gi\|89108307, gi\|... - gi\|89108307\|ref\|AP_002087.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|174... EG11825 - PhzC-PhzF family protein / PhzC-PhzF family predicted enzyme, function unknown EG11825 - PhzC-PhzF family protein / PhzC-PhzF family predicted enzyme, function unknown	235.0	[0..11]	[307..1]
gi\|75212837, gi\|... - gi\|75212837\|ref\|ZP_00712835.1\| COG0384: Predicted epimerase, PhzC/PhzF homolog [Escherichia coli B17... gi\|75190508, gi\|... - gi\|75190508\|ref\|ZP_00703775.1\| COG0384: Predicted epimerase, PhzC/PhzF homolog [Escherichia coli E24...	234.0	[0..11]	[307..1]
gi\|75257732, gi\|... - gi\|75257732\|ref\|ZP_00729217.1\| COG0384: Predicted epimerase, PhzC/PhzF homolog [Escherichia coli E22...	234.0	[0..11]	[307..1]
gi\|82776918, gi\|... - gi\|82776918\|ref\|YP_403267.1\| hypothetical protein SDY_1654 [Shigella dysenteriae Sd197], gi\|81241066...	234.0	[0..11]	[307..1]
gi\|188493204, gi... - gi\|75512582\|ref\|ZP_00735105.1\| COG0384: Predicted epimerase, PhzC/PhzF homolog [Escherichia coli 536...	233.0	[0..11]	[307..1]
YY46_CLOAB, Y344... - (P58293) Hypothetical protein CAC3446, Uncharacterized isomerase CA_C3446 OS=Clostridium acetobutyli... Y3446_CLOAB - Uncharacterized isomerase CA_C3446 OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 14...	233.0	[0..12]	[305..4]
gi\|75231782, gi\|... - gi\|75231782\|ref\|ZP_00718123.1\| COG0384: Predicted epimerase, PhzC/PhzF homolog [Escherichia coli B7A...	233.0	[0..11]	[307..1]
gi\|149904784, gi... - gi\|82747153\|ref\|ZP_00909653.1\| Phenazine biosynthesis PhzC/PhzF protein [Clostridium beijerincki NCI...	231.0	[0..12]	[305..4]
gi\|74312171, gi\|... - gi\|74312171\|ref\|YP_310590.1\| hypothetical protein SSON_1661 [Shigella sonnei Ss046], gi\|73855648\|gb\|...	231.0	[0..11]	[307..1]
gi\|115512826, gi... - gi\|117623702\|ref\|YP_852615.1\| hypothetical protein APECO1_601 [Escherichia coli APEC O1], gi\|1155128... gi\|218365158, gi... - gi\|218558389\|ref\|YP_002391302.1\| hypothetical protein ECS88_1559 [Escherichia coli S88], gi\|21836515... gi\|91210705, gi\|... - gi\|91210705\|ref\|YP_540691.1\| hypothetical protein UTI89_C1682 [Escherichia coli UTI89], gi\|91072279\|...	231.0	[0..11]	[307..1]

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Predicted Domain #1

Region A:
Residues: [1-307]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ESTSLYKKAG LKPQVYHVDA FTSQPFRGNS AGVVFPADNL SEAQMQLIAR ELGHSETAFL  60
   61 LHSDDSDVRI RYFTPTVEVP ICGHATVAAH YVRAKVLGLG NCTIWQTSLA GKHRVTIEKH 120
  121 NDDYRISLEQ GTPGFEPPLE GETRAAIINA LHLTEDDILP GLPIQVATTG HSKVMIPLKP 180
  181 EVDIDALSPD LNALTAISKK IGCNGFFPFQ IRPGKNETDG RMFSPAIGIV EDPVTGNANG 240
  241 PMGAWLVHHN VLPHDGNVLR VKGHQGRALG RDGMIEVTVT IRDNQPEKVT ISGTAVILFH 300
  301 AEWAIEL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	65.0
Match:	1qyaA
Description:	CRYSTAL STRUCTURE OF E. COLI PROTEIN YDDE
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.00848565859536	bayes_pls_golite062009
amino-acid racemase activity	0.0628393252100677	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: