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View Structure Prediction Details

Protein: gi|218185074
Organism: Oryza sativa Indica Group
Length: 375 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|218185074.

Description E-value Query
Range
Subject
Range
SKL2_ARATH - Probable inactive shikimate kinase like 2, chloroplastic OS=Arabidopsis thaliana GN=SKL2 PE=2 SV=2
217.0 [0..57] [372..70]

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Predicted Domain #1
Region A:
Residues: [1-91]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLASTCFSAP PPSSSSPSIP THLATLCCCF RPPARPPWPR SLLLLGAFPP PTRPLPRASV  60
   61 SSSTAPAKDY EFTDGGGEVE LRLDIGKLGI E

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [92-375]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NSRDVFVDVD DTSLLVRAKS DGTLRTLINV KQLFDRIKSS ETIWFIDEDQ LVVNLKKVEQ  60
   61 ELKWPDIDES WESLTSGITQ LLTGISVHIV GDSTDINEAV AKEIAEGIGY LPVCTSELLE 120
  121 SATEKSIDKW LASEGVDSVA EAECVVLESL SSHVRTVVAT LGGKQGAASR FDKWQYLHAG 180
  181 FTVWLSVSDA SDEASAKEEA RRSVSSGNVA YAKADVVVKL GGWDPEYTRA VAQGCLVALK 240
  241 QLTLADKKLA GKKSLYMRLG CRGDWPNIEP PGWDPDSDAP PTNI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 20.69897
Match: 2gksA
Description: No description for 2gksA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle