YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|196035025, gi...
Organism:	Bacillus cereus W
Length:	370 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|196035025, gi....

Description	E-value	Query Range	Subject Range
gi\|42739153, gi\|... - gi\|42783225\|ref\|NP_980472.1\| riboflavin biosynthesis protein RibD [Bacillus cereus ATCC 10987], gi\|4...	0.0	[1..370]	[1..370]
gi\|51974855, gi\|... - gi\|52141386\|ref\|YP_085445.1\| riboflavin biosynthesis protein [Bacillus cereus E33L], gi\|51974855\|gb\|...	0.0	[1..370]	[1..370]
gi\|49331895, gi\|... - gi\|49480339\|ref\|YP_038170.1\| riboflavin biosynthesis protein [Bacillus thuringiensis serovar konkuki...	0.0	[1..370]	[1..370]
gi\|47568170, gi\|... - gi\|47568170\|ref\|ZP_00238874.1\| riboflavin biosynthesis protein RibD [Bacillus cereus G9241], gi\|4755...	0.0	[1..370]	[1..370]
gi\|228653996, gi... - gi\|229129391\|ref\|ZP_04258362.1\| RibD (Riboflavin-specific deaminase) [Bacillus cereus BDRD-Cer4], gi... gi\|228671967, gi... - gi\|229111585\|ref\|ZP_04241136.1\| RibD (Riboflavin-specific deaminase) [Bacillus cereus Rock1-15], gi\|... gi\|228799401, gi... - gi\|228960377\|ref\|ZP_04122030.1\| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis serovar... gi\|29897753, gi\|... - gi\|30022196\|ref\|NP_833827.1\| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Bacillus cereus ...	0.0	[1..370]	[10..379]
gi\|65321502, gi\|... - gi\|65321502\|ref\|ZP_00394461.1\| COG1985: Pyrimidine reductase, riboflavin biosynthesis [Bacillus anth...	0.0	[1..370]	[1..370]
gi\|163864049, gi... - gi\|89207354\|ref\|ZP_01185897.1\| Riboflavin biosynthesis protein RibD:Riboflavin-specific deaminase, C...	0.0	[1..369]	[1..369]
gi\|89200754, gi\|... - gi\|89200754\|ref\|ZP_01179504.1\| Riboflavin biosynthesis protein RibD:Riboflavin-specific deaminase, C...	0.0	[1..369]	[1..369]
gi\|77638394, gi\|... - gi\|77685795\|ref\|ZP_00801179.1\| Riboflavin biosynthesis protein RibD:Riboflavin-specific deaminase, C...	0.0	[3..363]	[2..366]

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Predicted Domain #1

Region A:
Residues: [1-370]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDQEYMRIA LQLAEGTCGQ TSPNPMVGAV VVKDGNIVGM GAHLRAGEEH AEVHALHMAG  60
   61 DKAKGATVYV TLEPCSHFGK TPPCCELLIK KEVKRVVIAT LDCNPLVSGN GKRKLEEAGI 120
  121 EVTTGVLEAE AVLLNRYFFH YMKTKRPFVT IKTAMSLDGK TATVTGESKW ITGEKARADV 180
  181 HQYRHTHDAI LVGVNTVIAD NPHLTTRIPN GGQNPIRVIL DTHLRTPPSS HVITDSLAPT 240
  241 WIIVGTDVNQ EKIASYESKN IAIFQMKTKQ IEIQDVLHLL GEKQILSLFV EGGQTVHASF 300
  301 LQTKYFNEIV TYISPKLIGG SKAPTLFGGN GFSTLQDALS LEIQEMKQIG DDIKIVAHAR 360
  361 NEVTKCLQEL

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Detection Method:	PSI-BLAST
Confidence:	104.0
Match:	2b3zA
Description:	Crystal structure of a bifunctional deaminase and reductase involved in riboflavin biosynthesis
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits