YRC Public Data Repository - Protein Structure Prediction

Protein:	RL17_CAUCN
Organism:	Caulobacter crescentus NA1000
Length:	137 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RL17_CAUCN.

Description	E-value	Query Range	Subject Range
RL17_CAUSK - 50S ribosomal protein L17 OS=Caulobacter sp. (strain K31) GN=rplQ PE=3 SV=1	211.0	[0..1]	[137..1]
RL17_RHORT - 50S ribosomal protein L17 OS=Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG 43...	209.0	[0..1]	[137..1]
RL17_RHOP5 - 50S ribosomal protein L17 OS=Rhodopseudomonas palustris (strain BisA53) GN=rplQ PE=3 SV=1	208.0	[0..1]	[135..1]
RL17_BRASB - 50S ribosomal protein L17 OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=rplQ PE=3 SV=1	207.0	[0..1]	[135..1]
RL17_RHOPS - 50S ribosomal protein L17 OS=Rhodopseudomonas palustris (strain BisB5) GN=rplQ PE=3 SV=1	206.0	[0..1]	[135..1]
RL17_NITWN - 50S ribosomal protein L17 OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=rplQ PE=3 SV=1	205.0	[0..1]	[136..1]
RL17_NITHX - 50S ribosomal protein L17 OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=rplQ PE=3 SV=1	204.0	[0..1]	[136..1]
gi\|85698020, gi\|... - gi\|85715105\|ref\|ZP_01046089.1\| 50S ribosomal protein L17 [Nitrobacter sp. Nb-311A], gi\|85698020\|gb\|E...	204.0	[0..1]	[136..1]
gi\|84703944, gi\|... - gi\|84703944\|ref\|ZP_01017772.1\| 50S ribosomal protein L17 [Parvularcula bermudensis HTCC2503], gi\|846...	203.0	[0..1]	[137..1]
RL17_BRAJA - 50S ribosomal protein L17 OS=Bradyrhizobium japonicum GN=rplQ PE=3 SV=1 RL17_BRADU - 50S ribosomal protein L17 OS=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 1479...	203.0	[0..1]	[136..1]

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Predicted Domain #1

Region A:
Residues: [1-137]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRHGKAHRKL GRTSAHRTAM FANMSASLIK HEQIVTTLPK AKELRPIVEK LVTLAKRGDL  60
   61 HARRQAISSV RDVEQVGKLF AVLGPRYKER QGGYIRVLKA GFRYGDNAPM AVIEFVDRDV 120
  121 SEKGKDSGPV YVNDAED

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	49.39794
Match:	1p85L
Description:	70S ribosome functional complex
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	9.91574154879999	bayes_pls_golite062009
structural molecule activity	9.33953790706737	bayes_pls_golite062009
binding	1.23500675594838	bayes_pls_golite062009
protein binding	0.558431147696839	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: