YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|220942804
Organism:	synthetic construct
Length:	271 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|220942804.

Description	E-value	Query Range	Subject Range
gi\|194118062, gi... - gi\|195175385\|ref\|XP_002028435.1\| GL21292 [Drosophila persimilis], gi\|194118062\|gb\|EDW40105.1\| GL2129... gi\|125810276\|ref... - GA10704-PA [Drosophila pseudoobscura], GA10704 [Drosophila pseudoobscura pseudoobscura] gi\|125810276, gi... - gi\|54636597\|gb\|EAL26000.1\| GA10704 [Drosophila pseudoobscura pseudoobscura], gi\|125810276\|ref\|XP_001...	198.0	[0..1]	[266..1]
gi\|119114234, gi... - gi\|119114234\|ref\|XP_319140.3\| AGAP009997-PA [Anopheles gambiae str. PEST], gi\|116118319\|gb\|EAA13899.... AGAP009997-PA - Thioredoxin domain-containing protein 14 homolog precursor\|protein_coding\|3R:47430060:47430884:1\|gen...	194.0	[0..1]	[255..1]
gi\|157131114, gi... - gi\|157131114\|ref\|XP_001655808.1\| hypothetical protein AaeL_AAEL011995 [Aedes aegypti], gi\|108871651\|...	185.0	[0..1]	[269..1]
gi\|66514111 - gi\|66514111\|ref\|XP_394865.2\| PREDICTED: similar to CG11007-PA [Apis mellifera]	178.0	[0..1]	[255..1]
gi\|91085249 - gi\|91085249\|ref\|XP_973267.1\| PREDICTED: similar to Thioredoxin domain-containing protein 14 homolog ...	171.0	[0..1]	[255..1]
TMX2_MOUSE - Thioredoxin-related transmembrane protein 2 OS=Mus musculus GN=Tmx2 PE=1 SV=1	167.0	[0..7]	[265..18]
gi\|197365043, gi... - gi\|197365043\|ref\|YP_002144680.1\| thiol:disulfide interchange protein precursor [Salmonella enterica ... DSBD_SALPA - Thiol:disulfide interchange protein DsbD OS=Salmonella paratyphi A GN=dsbD PE=3 SV=1 DSBD_SALPA - Thiol:disulfide interchange protein DsbD OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=ds...	167.0	[0..16]	[237..326]
DSBD_SALTY - Thiol:disulfide interchange protein DsbD OS=Salmonella typhimurium GN=dsbD PE=3 SV=1 lcl\|NC_016856.1_... - [gene=dipZ] [protein=thiol:disulfide interchange protein] [protein_id=YP_005240633.1] [location=comp... gi\|205327424, gi... - gi\|205327424\|gb\|EDZ14188.1\| thiol:disulfide interchange protein DsbD [Salmonella enterica subsp. ent... DSBD_SALTY - Thiol:disulfide interchange protein DsbD OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700... DSBD_SALTY - Thiol:disulfide interchange protein dsbD OS=Salmonella typhimurium GN=dsbD PE=3 SV=1	167.0	[0..16]	[237..326]
DSBD_SALCH - Thiol:disulfide interchange protein DsbD OS=Salmonella choleraesuis GN=dsbD PE=3 SV=1 DSBD_SALCH - Thiol:disulfide interchange protein DsbD OS=Salmonella choleraesuis (strain SC-B67) GN=dsbD PE=3 SV=... DSBD_SALCH - Thiol:disulfide interchange protein dsbD OS=Salmonella choleraesuis GN=dsbD PE=3 SV=1	167.0	[0..16]	[237..326]

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Predicted Domain #1

Region A:
Residues: [1-126]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTWKKQMALL AKPYYWVNIL LAISYLLAKK TQFICTRLFI LAGEDEACDL DSREVEILFF  60
   61 LLIVVMIRSR KTGSVTMINY LASSFLYTKV ANAILWAYAD FRYGLGFLLL CVLVGMVLPE 120
  121 PSYRGP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [127-271]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EHITYFRNAQ VFEEELARDK RTSWLICFYT VWNPSCVNFA PVFAELSAEY NTDHLKFGKI  60
   61 DIGRFPDVAQ KYRISDSSFS RQLPTVILFQ QGKETDRRPC VDSKGKLQKF FFSSDNVRAT 120
  121 FGLNQLYKEA IERLPIAPKE AKKVQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	15.154902
Match:	2dj0A
Description:	No description for 2dj0A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits