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View Structure Prediction Details

Protein: gi|220947046
Organism: synthetic construct
Length: 729 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|220947046.

Description E-value Query
Range
Subject
Range
gi|66525526 - gi|66525526|ref|XP_392081.2| PREDICTED: similar to CG11107-PA isoform 1 [Apis mellifera]
639.0 [0..1] [729..1]

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Predicted Domain #1
Region A:
Residues: [1-71]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKRRIEVGE TYGSKAKKDP EASSSSAAAA AGTVAQILGG FVPNKQPPTM NPLTNTPYSQ  60
   61 RYQNLYKKRI A

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 69.0
Match: 2hyiC
Description: No description for 2hyiC was found.

Predicted Domain #2
Region A:
Residues: [72-580]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LPVFEYQADF MRLLSLHQCI VLVGETGSGK TTQIPQWCVD FAVSKGRKGV SCTQPRRVAA  60
   61 MSVAQRVSEE MDVKLGEEVG YSIRFEDCST AKTLLKYMTD GMLLREAMSD PMLDQYQVIL 120
  121 LDEAHERTLA TDILMGVLKE VIRQRSDLKL VVMSATLDAG KFQQYFDNAP LMKVPGRTHP 180
  181 VEIFYTPEPE RDYLEAAIRT VIQIHMCEEI EGDILMFLTG QEEIEEACKR IKREIDNLGS 240
  241 EIGELKCIPL YSTLPPNLQQ RIFEPAPPPN ANGAIGRKVV VSTNIAETSL TIDGVVFVID 300
  301 PGFAKQKVYN PRIRVESLLV SPISKASAQQ RSGRAGRTRP GKCFRLYTEK AFKNEMQDNT 360
  361 YPEILRSNLG TVVLQLKKLG IDDLVHFDFM DPPAPETLMR ALELLNYLAA LDDDGNLTDL 420
  421 GAVMSEFPLD PQLAKMLIAS CQHNCSNEIL SITAMLSVPQ CFVRPNEAKK AADEAKMRFA 480
  481 HIDGDHLTLL NVYHAFKQSS EDPNWCYEN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 24.39794
Match: 2qeqA
Description: No description for 2qeqA was found.

Predicted Domain #3
Region A:
Residues: [581-729]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FINFRSLKSA DNVRQQLARI MDRFNLRRTS TEFTSKDYYV NIRKALVQGF FMQVAHLERT  60
   61 GYYLTIKDNQ NVQLHPSTCL DHKPDWVIYN EFVLTTKNYI RTVTDVKPEW LCCLAPQYYD 120
  121 LNNFPQCEAK RQLELLQQRL ETKQYQKGF

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 25.79588
Match: PF07717.7
Description: No description for PF07717.7 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle