YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|220944496, gi...
Organism:	synthetic construct
Length:	228 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|220944496, gi....

Description	E-value	Query Range	Subject Range
gi\|54035520, gi\|... - gi\|55742817\|ref\|NP_001006981.1\| B-cell receptor-associated protein 29 [Rattus norvegicus], gi\|540355... gi\|55742817 - ref\|NP_001006981.1\| B-cell receptor-associated protein BAP29 [Rattus norvegicus]	195.0	[0..1]	[224..1]
CE25462 - status:Confirmed UniProt:Q9N3B5 protein_id:AAF59580.1	193.0	[0..1]	[228..1]
gi\|48734663, gi\|... - gi\|48734663\|gb\|AAH72342.1\| MGC83239 protein [Xenopus laevis], gi\|147902702\|ref\|NP_001085422.1\| MGC83...	190.0	[0..1]	[227..1]
gi\|56549095 - gi\|56549095\|ref\|NP_001008406.1\| B-cell receptor-associated protein BAP29 isoform c [Homo sapiens]	189.0	[0..1]	[221..1]
gi\|157759459 - gi\|157759459\|ref\|XP_001672073.1\| Hypothetical protein CBG13527 [Caenorhabditis briggsae AF16] gi\|39587908, gi\|... - gi\|39587908\|emb\|CAE67927.1\| Hypothetical protein CBG13527 [Caenorhabditis briggsae], gi\|187028555\|em...	188.0	[0..1]	[228..1]
gi\|56207835, gi\|... - gi\|68358456\|ref\|XP_701940.1\| PREDICTED: hypothetical protein XP_696848 [Danio rerio], gi\|56207835\|em...	182.0	[0..1]	[224..1]

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Predicted Domain #1

Region A:
Residues: [1-129]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLVWTLIAG FLYAEIALVL LLVLPVLTPY RWNRFFKSKF LSMLGQQAHI YFLLIMGILV  60
   61 IFLLEAIREM RKYSGLQQSN EVHLNVEMQH SMKLFRAQRN FYISGFAIFL ALVIRRLVNL 120
  121 ICTQANLMA

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	42.431798
Match:	PF05529.3
Description:	No description for PF05529.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [130-228]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QSEASFKQAQ SATAAARSLL ENKNTEKAKE AGEDTTLIEL NKLRERVQEL TSDLNREKKD  60
   61 KEAVKSQAES INREYDRLTE EYSKLQKKIT IGGGGNKDD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	6.69897
Match:	2i1jA
Description:	No description for 2i1jA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits