YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|194135142, gi...
Organism:	Drosophila sechellia
Length:	110 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|194135142, gi....

Description	E-value	Query Range	Subject Range
gi\|194177603, gi... - gi\|38048277\|gb\|AAR10041.1\| similar to Drosophila melanogaster CG10320 [Drosophila yakuba], gi\|195486...	148.0	[0..1]	[110..1]
gi\|157115043, gi... - gi\|157115043\|ref\|XP_001652532.1\| NADH dehydrogenase, putative [Aedes aegypti], gi\|108877066\|gb\|EAT41...	143.0	[0..1]	[109..1]
AGAP012374-PA - NADH dehydrogenase (ubiquinone) 1 beta subcomplex 3\|protein_coding\|3L:41232911:41233246:-1\|gene:AGAP... gi\|55234281, gi\|... - gi\|58393590\|ref\|XP_320183.2\| AGAP012374-PA [Anopheles gambiae str. PEST], gi\|55234281\|gb\|EAA00203.3\|...	136.0	[0..2]	[88..4]
gi\|125807359\|ref... - GA10242-PA [Drosophila pseudoobscura], GA10242 [Drosophila pseudoobscura pseudoobscura] gi\|54635548, gi\|... - gi\|54635548\|gb\|EAL24951.1\| GA10242 [Drosophila pseudoobscura pseudoobscura], gi\|125807359\|ref\|XP_001...	135.0	[0..1]	[84..1]
NDUB3_MOUSE - NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3 OS=Mus musculus GN=Ndufb3 PE=1 SV=1	132.0	[0..8]	[110..19]
gi\|149046091, gi... - gi\|27683843\|ref\|XP_217400.1\| PREDICTED: similar to NADH dehydrogenase (ubiquinone) 1 beta subcomplex...	130.0	[0..8]	[110..15]
NDUFB3 - NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 3, 12kDa gi\|123981056, gi... - gi\|123995861\|gb\|ABM85532.1\| NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 3, 12kDa [synthetic c... NDUB3_GORGO - NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3 OS=Gorilla gorilla gorilla GN=NDUFB3 PE=... NDUB3_PANTR - NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3 OS=Pan troglodytes GN=NDUFB3 PE=3 SV=3 gi\|111662139 - gi\|111662139\|gb\|ABH12212.1\| mitochondrial complex I subunit NDUFB3 [Gorilla gorilla]	126.0	[0..8]	[95..13]
gi\|109100553, gi... - gi\|109102863\|ref\|XP_001113376.1\| PREDICTED: similar to NADH dehydrogenase (ubiquinone) 1 beta subcom...	126.0	[0..8]	[95..13]
NDUB3_PONPY - NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3 OS=Pongo pygmaeus GN=NDUFB3 PE=3 SV=3 NDUB3_PONAB - NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3 OS=Pongo abelii GN=NDUFB3 PE=3 SV=3	124.0	[0..4]	[95..5]

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Predicted Domain #1

Region A:
Residues: [1-110]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGGHHGEPYT VPHASTYKVE SVPQLVEVKE ALGRQGLKDP WLRNEVWRYE PKAFGTHRSR  60
   61 LNTFLFRGLG VGFCAFLATV AVEYALGIGK GQGGHGHGHG HEEHGDKGHH

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	34.346787
Match:	PF08122.3
Description:	No description for PF08122.3 was found.

Shown below is our most confident prediction for this domain.
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Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits