YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|208968679
Organism:	synthetic construct
Length:	499 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|208968679.

Description	E-value	Query Range	Subject Range
CCDS827.1_1 - null gi\|109013443, gi... - gi\|109013446\|ref\|XP_001101557.1\| PREDICTED: potassium voltage-gated channel, shaker-related subfamil...	0.0	[1..499]	[1..499]
gi\|9652317, gi\|1... - gi\|9652317\|gb\|AAF91476.1\|AF284420_1 potassium channel subunit Kv 1.2 [Oryctolagus cuniculus], gi\|130...	0.0	[1..499]	[1..499]
gi\|67097558, gi\|... - gi\|67097558\|gb\|AAY67749.1\| potassium voltage-gated channel, shaker-related subfamily, member 2 [Sus ...	0.0	[1..499]	[1..499]
KCNA2_MOUSE - Potassium voltage-gated channel subfamily A member 2 OS=Mus musculus GN=Kcna2 PE=1 SV=1 gi\|1235595 - gi\|1235595\|emb\|CAA34134.1\| unnamed protein product [Rattus rattus] KCNA2_RAT - Potassium voltage-gated channel subfamily A member 2 OS=Rattus norvegicus GN=Kcna2 PE=1 SV=1	0.0	[1..499]	[1..499]
gi\|26336384, gi\|... - gi\|31543024\|ref\|NP_032443.2\| potassium voltage-gated channel, shaker-related subfamily, member 2 [Mu...	0.0	[1..499]	[1..499]
KCNA2_CANLF - Potassium voltage-gated channel subfamily A member 2 OS=Canis lupus familiaris GN=KCNA2 PE=2 SV=1	0.0	[1..499]	[1..499]
gi\|542179953\|ref... - PREDICTED: potassium voltage-gated channel subfamily A member 2 isoform X3 [Zonotrichia albicollis],... gi\|45383239, gi\|... - gi\|45383239\|ref\|NP_989794.1\| potassium voltage-gated channel, shaker-related subfamily, member 2 [Ga...	0.0	[1..499]	[1..499]
gi\|147904836, gi... - gi\|147904836\|ref\|NP_001079222.1\| Kv1.2' potassium channel [Xenopus laevis], gi\|13021992\|gb\|AAK11602....	2.0E-99	[1..499]	[1..499]
gi\|68353858, gi\|... - gi\|68353858\|ref\|XP_691312.1\| PREDICTED: similar to potassium channel Kv1.2a [Danio rerio], gi\|162139...	3.0E-98	[1..499]	[1..495]

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Predicted Domain #1

Region A:
Residues: [1-499]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVATGDPAD EAAALPGHPQ DTYDPEADHE CCERVVINIS GLRFETQLKT LAQFPETLLG  60
   61 DPKKRMRYFD PLRNEYFFDR NRPSFDAILY YYQSGGRLRR PVNVPLDIFS EEIRFYELGE 120
  121 EAMEMFREDE GYIKEEERPL PENEFQRQVW LLFEYPESSG PARIIAIVSV MVILISIVSF 180
  181 CLETLPIFRD ENEDMHGSGV TFHTYSNSTI GYQQSTSFTD PFFIVETLCI IWFSFEFLVR 240
  241 FFACPSKAGF FTNIMNIIDI VAIIPYFITL GTELAEKPED AQQGQQAMSL AILRVIRLVR 300
  301 VFRIFKLSRH SKGLQILGQT LKASMRELGL LIFFLFIGVI LFSSAVYFAE ADERESQFPS 360
  361 IPDAFWWAVV SMTTVGYGDM VPTTIGGKIV GSLCAIAGVL TIALPVPVIV SNFNYFYHRE 420
  421 TEGEEQAQYL QVTSCPKIPS SPDLKKSRSA STISKSDYME IQEGVNNSNE DFREENLKTA 480
  481 NCTLANTNYV NITKMLTDV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	106.0
Match:	2a79B
Description:	Mammalian Shaker Kv1.2 potassium channel- beta subunit complex
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits