YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|220951344
Organism:	synthetic construct
Length:	95 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|220951344.

Description	E-value	Query Range	Subject Range
gi\|54641159, gi\|... - gi\|54641159\|gb\|EAL29909.1\| GA15189 [Drosophila pseudoobscura pseudoobscura], gi\|125976760\|ref\|XP_001... gi\|195170789, gi... - gi\|195170789\|ref\|XP_002026194.1\| GL16212 [Drosophila persimilis], gi\|194111074\|gb\|EDW33117.1\| GL1621... gi\|125976760\|ref... - GA15189-PA [Drosophila pseudoobscura], GA15189 [Drosophila pseudoobscura pseudoobscura]	108.0	[0..1]	[95..1]
gi\|50728156 - gi\|50728156\|ref\|XP_416009.1\| PREDICTED: similar to U6 snRNA-associated Sm-like protein LSm8 [Gallus ...	108.0	[0..2]	[95..135]
gi\|109067976 - gi\|109067976\|ref\|XP_001097050.1\| PREDICTED: similar to U6 snRNA-associated Sm-like protein LSm8 [Mac...	107.0	[0..2]	[95..235]
gi\|6686407, gi\|2... - gi\|6686407\|gb\|AAF23841.1\|AC007234_13 F1E22.8 [Arabidopsis thaliana], pir\|\|G96681 protein F1E22.8 [im...	102.0	[0..1]	[95..489]
gi\|109139334 - gi\|109139334\|gb\|ABE96774.2\| U6 snRNA-associated Sm-like protein LSm8 [Bos taurus]	101.0	[0..2]	[95..33]
gi\|47217413 - gi\|47217413\|emb\|CAG00773.1\| unnamed protein product [Tetraodon nigroviridis]	101.0	[0..1]	[89..4]
gi\|112305, gi\|206694 - gi\|206694\|gb\|AAA42059.1\| snRNP-associated polypeptide N, pir\|\|A35448 small nuclear ribonucleoprotein...	100.0	[0..2]	[89..7]
gi\|82623401, gi\|... - gi\|82623401\|gb\|ABB87115.1\| glycine rich protein-like [Solanum tuberosum], gi\|77745469\|gb\|ABB02633.1\|...	100.0	[0..1]	[92..4]
LSM4_FAGSY - Probable U6 snRNA-associated Sm-like protein LSm4 OS=Fagus sylvatica GN=LSM4 PE=2 SV=1	100.0	[0..1]	[92..4]

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Predicted Domain #1

Region A:
Residues: [1-95]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGLESYINH TVSIITADGR NFIGTLKGFD QTINIIIDEC HERVFSTTSG IEQIVLGLHI  60
   61 IRGDNIAVIG LIDETIDSRL DLANIRGEPL GPVVH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	17.522879
Match:	1d3bB
Description:	B core SNRNP protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
	9.36615441177233	bayes_pls_golite062009
RNA binding	5.81718051012035	bayes_pls_golite062009
nucleic acid binding	2.69031444148163	bayes_pls_golite062009
mRNA binding	2.57166143288861	bayes_pls_golite062009
binding	2.04681172391952	bayes_pls_golite062009
protein binding	0.187097443004706	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: