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View Structure Prediction Details

Protein: gi|220943684
Organism: synthetic construct
Length: 823 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|220943684.

Description E-value Query
Range
Subject
Range
gi|114662650 - gi|114662650|ref|XP_510982.2| PREDICTED: nucleoporin 93kDa [Pan troglodytes]
1008.0 [0..1] [823..103]

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Predicted Domain #1
Region A:
Residues: [1-163]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLMELLKQA QRLTNETNTD TEVPGVERTM SQVLQATKEF HSRVTQMGTN DLQAHILLGS  60
   61 KGVDLPKLTQ KLESLSARQT FEPIDPVTET NVQAYLKNER ENAILSVIDE TNRSIFKSVE 120
  121 RQKWRCIYSE WGEEKEALLN ALVGPNQQDF PDVQFQIVPT AMA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [164-823]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DEPTPYSQLN GHEQMYAEQI AIHNQSIILG RRPNLLSTLA HVVQDSFNDE SVAEMWNVLQ  60
   61 FMTALPPVSS TIDPIKNRQT SPQFVEQART YLERRYRTYM RKFIVANLAK ARRGGIPSVY 120
  121 HMVRSYVGVT LQGQRALYGL HDVNNGQPLW PHVYYSLRSG DMDAAALYLK ESGTCPDLLT 180
  181 LLTLRKNGDR DNLMVKLEGQ LKLEYNSRLR ACTDPYKKAV YVVLLACDPH FTHVELMRSI 240
  241 DDFLWMQLSI LRRSDQSDSN TEQLTFSGLQ SLILEKYGEN YFNAREKAAL YFQVLTLTGQ 300
  301 FEAAIEFLAR TEKNRTHAIH MAIALNEISM LGTPRSVEQS LLSSDPDDPK PMKRLNLVRL 360
  361 IVMYTKCFER TDTTQALHYY YLLRNFKSEN GRGNVMLTCV CDLLVEKCDD EMLELIFGTE 420
  421 DKKNGLRYGG IYAEFQIHEC DKYSLAEMVG DELSKRGDYE LAIELYFIGG QLDKALRLVN 480
  481 SLLAQVVHQP TQNGSVRNRL GDIINRLDAA LVVRKSDVEV QVVVTYTVLT KVMKFFDHYH 540
  541 EGALRSALEI LTNNHLIPAS SLEVDECVTN IKRMGPEVIK VLPDILLASM DIVYQEYVKL 600
  601 MDSNETASGF FDESKCVNKE PAVKHLRDRA KAFTNMAASV PYRMPSTTNQ RLVQLEILMH 660
  661 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 158.0
Match: 2qx5A
Description: No description for 2qx5A was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle