YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|220944126
Organism:	synthetic construct
Length:	271 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|220944126.

Description	E-value	Query Range	Subject Range
7B2-PB - The gene 7B2 is referred to in FlyBase by the symbol Dmel\7B2 (CG1168, FBgn0041707). It is a protein...	431.0	[0..1]	[271..1]
gi\|125776780, gi... - gi\|54639135\|gb\|EAL28537.1\| GA11140-PA [Drosophila pseudoobscura], gi\|125776780\|ref\|XP_001359391.1\| G...	370.0	[0..1]	[271..296]
gi\|55237601, gi\|... - gi\|58389937\|ref\|XP_317375.2\| ENSANGP00000011718 [Anopheles gambiae str. PEST], gi\|55237601\|gb\|EAA126...	345.0	[0..5]	[266..34]
gi\|157126249, gi... - gi\|157126249\|ref\|XP_001654557.1\| neuroendocrine protein 7b2 [Aedes aegypti], gi\|108882529\|gb\|EAT4675...	299.0	[0..6]	[266..1]
gi\|114656135 - gi\|114656135\|ref\|XP_510273.2\| PREDICTED: secretory granule, neuroendocrine protein 1 (7B2 protein) i... SCG5 - secretogranin V (7B2 protein)	277.0	[0..37]	[257..1]
gi\|109080479 - gi\|109080479\|ref\|XP_001083853.1\| PREDICTED: secretogranin V (7B2 protein) isoform 3 [Macaca mulatta]	277.0	[0..37]	[257..1]
gi\|67970826 - gi\|67970826\|dbj\|BAE01755.1\| unnamed protein product [Macaca fascicularis]	276.0	[0..37]	[257..1]

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Predicted Domain #1

Region A:
Residues: [1-107]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLFRSQSVYM MVAMLVVALS GYQVQSYSAK DILADVLMTD LLNRMDKDMQ VGYYDVGNEA  60
   61 AAGSKDNVDL VSRSEYARLC DGGSDCILQS GSASGAASHP SLRDDEF

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [108-271]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LQHSSLWGHQ FISGGMGEGP NRYPTIVKND AGLPAYCNPP NPCPEGYDME TQGGSCIVDF  60
   61 ENTAIFSREF QAAQDCTCDN EHMFDCSEQD SADVGGDKGD LNSAVEQYIM QMGQENSLNN 120
  121 VNSLAKKAGY PVMPDPRLDD AVINPFLQGD RLPIAAKKGN LLFH

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits