YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|213052253
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. E00-7866
Length:	87 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|213052253.

Description	E-value	Query Range	Subject Range
gi\|83585391 - gi\|83585391\|ref\|ZP_00924037.1\| hypothetical protein Ecol1_01003369 [Escherichia coli 101-1]	1.0E-22	[1..87]	[18..104]
gi\|226840022, gi... - gi\|254038398\|ref\|ZP_04872456.1\| YcfR [Escherichia sp. 1_1_43], gi\|226840022\|gb\|EEH72043.1\| YcfR [Esc... gi\|237706015, gi... - gi\|237706015\|ref\|ZP_04536496.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22689... gi\|606177\|gb\|AAA... - ORF_o104 [Escherichia coli] gi\|227835349, gi... - gi\|227887953\|ref\|ZP_04005758.1\| protein YhcN [Escherichia coli 83972], gi\|227835349\|gb\|EEJ45815.1\| p... gi\|26249819, gi\|... - gi\|26249819\|ref\|NP_755859.1\| hypothetical protein c3993 [Escherichia coli CFT073], gi\|26110247\|gb\|AA... gi\|91212658, gi\|... - gi\|91212658\|ref\|YP_542644.1\| hypothetical protein UTI89_C3669 [Escherichia coli UTI89], gi\|91074232\|... gi\|606177, gi\|20... - pir\|\|H65115 hypothetical protein b3238 - Escherichia coli (strain K-12), gi\|606177\|gb\|AAA58040.1\| OR... gi\|13363584, gi\|... - gi\|15833365\|ref\|NP_312138.1\| hypothetical protein ECs4111 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|16131128, gi\|... - gb\|AAC76270.1\| orf, hypothetical protein; conserved hypothetical protein [Escherichia coli K12], gi... gi\|13363584, gi\|... - gi\|15833365\|ref\|NP_312138.1\| hypothetical protein ECs4111 [Escherichia coli O157:H7], gi\|13363584\|db... gi\|12517859, gi\|... - gi\|15803772\|ref\|NP_289806.1\| hypothetical protein Z4597 [Escherichia coli O157:H7 EDL933], gi\|125178... gi\|168769094, gi... - gi\|189361759\|gb\|EDU80178.1\| protein YcfR [Escherichia coli O157:H7 str. EC4486], gi\|168769094\|ref\|ZP... gi\|168777633, gi... - gi\|187767176\|gb\|EDU31020.1\| protein YcfR [Escherichia coli O157:H7 str. EC4196], gi\|168777633\|ref\|ZP... gi\|195939436 - gi\|195939436\|ref\|ZP_03084818.1\| hypothetical protein EscherichcoliO157_23998 [Escherichia coli O157:... gi\|209157344, gi... - gi\|209395944\|ref\|YP_002272701.1\| protein YcfR [Escherichia coli O157:H7 str. EC4115], gi\|209157344\|g... gi\|75176076 - gi\|75176076\|ref\|ZP_00696244.1\| hypothetical protein SboyB_01003901 [Shigella boydii BS512] gi\|115514646, gi... - gi\|117625522\|ref\|YP_858845.1\| hypothetical protein APECO1_3206 [Escherichia coli APEC O1], gi\|115514... gi\|75511866 - gi\|75511866\|ref\|ZP_00734478.1\| hypothetical protein Ecol5_01003853 [Escherichia coli 53638] gi\|75256608 - gi\|75256608\|ref\|ZP_00728238.1\| hypothetical protein EcolE2_01003509 [Escherichia coli E22] gi\|75237907 - gi\|75237907\|ref\|ZP_00721918.1\| hypothetical protein EcolF_01003713 [Escherichia coli F11] gi\|75234854 - gi\|75234854\|ref\|ZP_00719145.1\| hypothetical protein EcolE1_01003270 [Escherichia coli E110019] gi\|75228636 - gi\|75228636\|ref\|ZP_00715261.1\| hypothetical protein EcolB7_01003067 [Escherichia coli B7A] gi\|75209675 - gi\|75209675\|ref\|ZP_00709887.1\| hypothetical protein EcolB_01003199 [Escherichia coli B171] gi\|75197181 - gi\|75197181\|ref\|ZP_00707251.1\| hypothetical protein EcolH_01002995 [Escherichia coli HS] gi\|75188038 - gi\|75188038\|ref\|ZP_00701305.1\| hypothetical protein EcolE_01001280 [Escherichia coli E24377A]	6.0E-22	[1..87]	[18..104]
gi\|74313769, gi\|... - gi\|74313769\|ref\|YP_312188.1\| hypothetical protein SSON_3380 [Shigella sonnei Ss046], gi\|73857246\|gb\|...	6.0E-22	[1..87]	[18..104]
Q66F82\|Q66F82_YERPS - Putative exported protein precursor - Yersinia pseudotuberculosis gi\|166961442, gi... - gi\|167420636\|ref\|ZP_02312389.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... gi\|167049260, gi... - gi\|167401235\|ref\|ZP_02306735.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|167470484 - gi\|167470484\|ref\|ZP_02335188.1\| hypothetical protein YpesF_21987 [Yersinia pestis FV-1] gi\|167423526, gi... - gi\|167423526\|ref\|ZP_02315279.1\| conserved hypothetical protein [Yersinia pestis biovar Mediaevalis s... gi\|25321953 - pir\|\|AG0427 probable exported protein YPO3518 [imported] - Yersinia pestis (strain CO92) gi\|186893819, gi... - gi\|186893819\|ref\|YP_001870931.1\| hypothetical protein YPTS_0488 [Yersinia pseudotuberculosis PB1/+],... gi\|170025978, gi... - gi\|170025978\|ref\|YP_001722483.1\| hypothetical protein YPK_3763 [Yersinia pseudotuberculosis YPIII], ... gi\|45435276, gi\|... - gi\|45440419\|ref\|NP_991958.1\| hypothetical protein YP_0565 [Yersinia pestis biovar Microtus str. 9100... gi\|22124580, gi\|... - gi\|22124580\|ref\|NP_668003.1\| hypothetical protein y0666 [Yersinia pestis KIM], gi\|21957382\|gb\|AAM842... gi\|15981442, gi\|... - gi\|218930532\|ref\|YP_002348407.1\| hypothetical protein YPO3518 [Yersinia pestis CO92], gi\|16123664\|re... gi\|229679667, gi... - gi\|229903897\|ref\|ZP_04519010.1\| putative exported protein [Yersinia pestis Nepal516], gi\|229679667\|g... gi\|51588092, gi\|... - gi\|51594810\|ref\|YP_069001.1\| hypothetical protein YPTB0458 [Yersinia pseudotuberculosis IP 32953], g... gi\|165928179, gi... - gi\|165928179\|ref\|ZP_02224011.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... gi\|165937563, gi... - gi\|89104087\|ref\|ZP_01176641.1\| COG0214: Pyridoxine biosynthesis enzyme [Yersinia pestis biovar Orien... gi\|166214029, gi... - gi\|166214029\|ref\|ZP_02240064.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|108777979, gi... - gi\|108806066\|ref\|YP_649982.1\| hypothetical protein YPA_0068 [Yersinia pestis Antiqua], gi\|108777979\|... gi\|166011384, gi... - gi\|166011384\|ref\|ZP_02232282.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|229695537, gi... - gi\|229839171\|ref\|ZP_04459330.1\| putative exported protein [Yersinia pestis biovar Orientalis str. PE... gi\|229896660, gi... - gi\|229896660\|ref\|ZP_04511827.1\| putative exported protein [Yersinia pestis Pestoides A], gi\|22970043... gi\|229899735, gi... - gi\|229899735\|ref\|ZP_04514876.1\| putative exported protein [Yersinia pestis biovar Orientalis str. In... gi\|162352278, gi... - gi\|77634760\|ref\|ZP_00796854.1\| COG0214: Pyridoxine biosynthesis enzyme [Yersinia pestis Angola], gi\|... gi\|149288932, gi... - gi\|153997295\|ref\|ZP_02022395.1\| putative exported protein [Yersinia pestis CA88-4125], gi\|149288932\|... gi\|145600814, gi... - gi\|145600814\|ref\|YP_001164890.1\| hypothetical protein YPDSF_3567 [Yersinia pestis Pestoides F], gi\|1... gi\|152959945, gi... - gi\|153948450\|ref\|YP_001402572.1\| hypothetical protein YpsIP31758_3618 [Yersinia pseudotuberculosis I...	7.0E-22	[1..87]	[1..87]
gi\|110616648, gi... - gi\|110807100\|ref\|YP_690620.1\| hypothetical protein SFV_3265 [Shigella flexneri 5 str. 8401], gi\|1106... gi\|24114525, gi\|... - gi\|24114525\|ref\|NP_709035.1\| hypothetical protein SF3278 [Shigella flexneri 2a str. 301], gi\|2405371... gi\|30042829, gi\|... - gi\|30064570\|ref\|NP_838741.1\| hypothetical protein S3493 [Shigella flexneri 2a str. 2457T], gi\|300428...	8.0E-22	[1..87]	[18..104]
gi\|82545533, gi\|... - gi\|82545533\|ref\|YP_409480.1\| hypothetical protein SBO_3151 [Shigella boydii Sb227], gi\|81246944\|gb\|A...	9.0E-22	[1..87]	[18..104]
gi\|56129545, gi\|... - gi\|56415288\|ref\|YP_152363.1\| hypothetical protein SPA3228 [Salmonella enterica subsp. enterica serov... gi\|207858609, gi... - gi\|207858609\|ref\|YP_002245260.1\| hypothetical protein SEN3194 [Salmonella enterica subsp. enterica s... gi\|205274043, gi... - gi\|205354262\|ref\|YP_002228063.1\| hypothetical protein SG3251 [Salmonella enterica subsp. enterica se... gi\|197364218, gi... - gi\|197364218\|ref\|YP_002143855.1\| hypothetical protein SSPA3014 [Salmonella enterica subsp. enterica ... gi\|194401699, gi... - gi\|194443036\|ref\|YP_002042616.1\| protein YhcN [Salmonella enterica subsp. enterica serovar Newport s... gi\|205322503, gi... - gi\|205322503\|gb\|EDZ10342.1\| protein YcfR [Salmonella enterica subsp. enterica serovar Saintpaul str.... gi\|161616380, gi... - gi\|161616380\|ref\|YP_001590345.1\| hypothetical protein SPAB_04189 [Salmonella enterica subsp. enteric...	1.0E-21	[1..87]	[1..87]
gi\|85675042, gi\|... - gi\|89108445\|ref\|AP_002225.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|856... EG13929 - DUF1471 family periplasmic protein / DUF1471 family periplasmic tri-domain protein, function unknown gi\|169889103, gi... - gi\|170081268\|ref\|YP_001730588.1\| hypothetical protein ECDH10B_1737 [Escherichia coli str. K-12 subst... EG13929 - DUF1471 family periplasmic protein / DUF1471 family periplasmic tri-domain protein, function unknown YDGH_ECOLI - Protein ydgH precursor - Escherichia coli gi\|238900820, gi... - gi\|238900820\|ref\|YP_002926616.1\| hypothetical protein BWG_1419 [Escherichia coli BW2952], gi\|2388629...	3.0E-21	[1..87]	[1..90]
gi\|197249317, gi... - gi\|197249317\|ref\|YP_002148286.1\| hypothetical protein SeAg_B3553 [Salmonella enterica subsp. enteric... gi\|194735343, gi... - gi\|194735343\|ref\|YP_002116310.1\| hypothetical protein SeSA_A3554 [Salmonella enterica subsp. enteric... gi\|194455618, gi... - gi\|194469254\|ref\|ZP_03075238.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|194449210, gi... - gi\|194449210\|ref\|YP_002047390.1\| hypothetical protein SeHA_C3660 [Salmonella enterica subsp. enteric... gi\|199605097, gi... - gi\|200387999\|ref\|ZP_03214611.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|197937668, gi... - gi\|198243152\|ref\|YP_002217331.1\| hypothetical protein SeD_A3722 [Salmonella enterica subsp. enterica... gi\|197364219, gi... - gi\|197364219\|ref\|YP_002143856.1\| hypothetical protein SSPA3015 [Salmonella enterica subsp. enterica ... gi\|197264850, gi... - gi\|197264850\|ref\|ZP_03164924.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|205336188, gi... - gi\|205336188\|gb\|EDZ22952.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|197287913, gi... - gi\|197287913\|gb\|EDY27301.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|205332017, gi... - gi\|205332017\|gb\|EDZ18781.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|238913557 - gi\|238913557\|ref\|ZP_04657394.1\| hypothetical protein SentesTe_20843 [Salmonella enterica subsp. ente... gi\|205328082, gi... - gi\|205328082\|gb\|EDZ14846.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|194442358, gi... - gi\|194442358\|ref\|YP_002042617.1\| hypothetical protein SNSL254_A3625 [Salmonella enterica subsp. ente... gi\|168822742, gi... - gi\|205340884\|gb\|EDZ27648.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|195633640, gi... - gi\|195633640\|gb\|EDX52054.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|168262617, gi... - gi\|205348514\|gb\|EDZ35145.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|214000995 - gi\|214000995\|ref\|ZP_03411730.1\| hypothetical protein Salmonellentericaenterica_10725 [Salmonella ent... gi\|213973548 - gi\|213973548\|ref\|ZP_03400807.1\| hypothetical protein Salmonellaentericaenterica_02321 [Salmonella en... gi\|213857726 - gi\|213857726\|ref\|ZP_03384697.1\| hypothetical protein SentesT_21585 [Salmonella enterica subsp. enter... gi\|213646652 - gi\|213646652\|ref\|ZP_03376705.1\| hypothetical protein SentesTy_04595 [Salmonella enterica subsp. ente... gi\|224585159, gi... - gi\|224585159\|ref\|YP_002638958.1\| hypothetical protein SPC_3432 [Salmonella enterica subsp. enterica ... gi\|213022797 - gi\|213022797\|ref\|ZP_03337244.1\| hypothetical protein Salmonelentericaenterica_09318 [Salmonella ente... gi\|207858610, gi... - gi\|207858610\|ref\|YP_002245261.1\| hypothetical protein SEN3195 [Salmonella enterica subsp. enterica s... gi\|205274044, gi... - gi\|205354263\|ref\|YP_002228064.1\| hypothetical protein SG3252 [Salmonella enterica subsp. enterica se... gi\|204319928, gi... - gi\|204931161\|ref\|ZP_03221955.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|62181870, gi\|... - gi\|62181870\|ref\|YP_218287.1\| putative periplasmic protein [Salmonella enterica subsp. enterica serov... gi\|213618917 - gi\|213618917\|ref\|ZP_03372743.1\| hypothetical protein SentesTyp_21610 [Salmonella enterica subsp. ent... gi\|56415289, gi\|... - gi\|56415289\|ref\|YP_152364.1\| hypothetical protein SPA3229 [Salmonella enterica subsp. enterica serov... gi\|213583119 - gi\|213583119\|ref\|ZP_03364945.1\| hypothetical protein SentesTyph_18693 [Salmonella enterica subsp. en... gi\|213425843 - gi\|213425843\|ref\|ZP_03358593.1\| hypothetical protein SentesTyphi_09424 [Salmonella enterica subsp. e... gi\|213052254 - gi\|213052254\|ref\|ZP_03345132.1\| hypothetical protein Salmoneentericaenterica_04547 [Salmonella enter... gi\|16762121 - gi\|16762121\|ref\|NP_457738.1\| hypothetical protein STY3543 [Salmonella enterica subsp. enterica serov... gi\|167552933, gi... - gi\|205322512\|gb\|EDZ10351.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... lcl\|NC_016856.1_... - [gene=STM14_4056] [protein=hypothetical protein] [protein_id=YP_005239548.1] [location=3543129..3543... gi\|161365745, gi... - gi\|161616381\|ref\|YP_001590346.1\| hypothetical protein SPAB_04190 [Salmonella enterica subsp. enteric... gi\|16766657, gi\|... - gi\|16766657\|ref\|NP_462272.1\| putative periplasmic protein [Salmonella typhimurium LT2], gi\|16421922\|... gi\|29139245, gi\|... - gi\|29143610\|ref\|NP_806952.1\| hypothetical protein t3277 [Salmonella enterica subsp. enterica serovar... gi\|25321957, gi\|... - gi\|25321957\|pir\|\|AG0910 conserved hypothetical protein STY3543 [imported] - Salmonella enterica subs...	3.0E-21	[1..87]	[1..88]
gi\|194432011, gi... - gi\|83570994\|ref\|ZP_00922436.1\| hypothetical protein Sdys1_01000824 [Shigella dysenteriae 1012], gi\|1...	6.0E-21	[1..87]	[1..90]

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Predicted Domain #1

Region A:
Residues: [1-87]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIKTTVATL SILSVLSFGA FAAEPISAEQ AQNREAIGSV SVSAIGSSPM DMNAMLSKKA  60
   61 DEQGATAYHI TEARSGSNWH ATAELYK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	16.0
Match:	2nocA
Description:	No description for 2nocA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits