YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|220943724, gi...
Organism:	synthetic construct
Length:	148 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|220943724, gi....

Description	E-value	Query Range	Subject Range
gi\|38048661 - gi\|38048661\|gb\|AAR10233.1\| similar to Drosophila melanogaster ocn [Drosophila yakuba]	239.0	[0..1]	[148..1]
gi\|12408230 - gi\|12408230\|gb\|AAG50379.1\| ocnus [Drosophila orena]	225.0	[0..1]	[140..1]
gi\|52354924, gi\|... - gi\|52354932\|gb\|AAU44666.1\| ocnus [Drosophila simulans], gi\|52354930\|gb\|AAU44665.1\| ocnus [Drosophila... gi\|12408220 - gi\|12408220\|gb\|AAG50374.1\| ocnus [Drosophila sechellia]	225.0	[0..1]	[140..1]
gi\|12408222 - gi\|12408222\|gb\|AAG50375.1\| ocnus [Drosophila mauritiana]	224.0	[0..1]	[140..1]
JANB_DROSE - Sex-regulated protein janus-B OS=Drosophila sechellia GN=janB PE=3 SV=1	214.0	[0..1]	[141..1]
JANB_DROER - Sex-regulated protein janus-B OS=Drosophila erecta GN=janB PE=3 SV=1	208.0	[0..1]	[140..1]
janB-PA - The gene janus B is referred to in FlyBase by the symbol Dmel\janB (CG7931, FBgn0001281). It is a pr...	205.0	[0..1]	[141..1]

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Predicted Domain #1

Region A:
Residues: [1-148]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTLNLLAPV SQLLKPLRRQ SSSRVNALLI NVPRVQLSKG KNKYLLMMIH MHGLTRFGRT  60
   61 IVRGSASKDH EEIFEEIQKE MDKIGICAKC LGGGFISNKE DKKVMKIYGC CKTFGEAPHG 120
  121 RTKDILLSWT KFQHYNIILP KKNLNAYQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	40.522879
Match:	2ai6A
Description:	No description for 2ai6A was found.

Predicted functions:

Term	Confidence	Notes
binding	0.575856086979549	bayes_pls_golite062009
protein binding	0.194429269874431	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: