YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|220944668, gi...
Organism:	synthetic construct
Length:	258 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|220944668, gi....

Description	E-value	Query Range	Subject Range
gi\|74216864 - gi\|74216864\|dbj\|BAE26554.1\| unnamed protein product [Mus musculus]	349.0	[0..6]	[245..34]
gi\|73989278 - gi\|73989278\|ref\|XP_534120.2\| PREDICTED: similar to Mediator complex subunit 4 (Mediator of RNA polym...	348.0	[0..6]	[245..118]
gi\|109120699 - gi\|109120699\|ref\|XP_001100111.1\| PREDICTED: similar to Mediator complex subunit 4 (Mediator of RNA p...	348.0	[0..6]	[245..25]
MED4_RAT - Mediator of RNA polymerase II transcription subunit 4 OS=Rattus norvegicus GN=Med4 PE=2 SV=1	348.0	[0..6]	[245..25]
gi\|194118381, gi... - gi\|195160813\|ref\|XP_002021268.1\| GL24898 [Drosophila persimilis], gi\|194118381\|gb\|EDW40424.1\| GL2489... gi\|125978863, gi... - gi\|54642224\|gb\|EAL30973.1\| GA21204 [Drosophila pseudoobscura pseudoobscura], gi\|125978863\|ref\|XP_001... gi\|125978863\|ref... - GA21204-PA [Drosophila pseudoobscura], GA21204 [Drosophila pseudoobscura pseudoobscura]	347.0	[0..1]	[245..1]
gi\|58377422, gi\|... - gi\|58377422\|ref\|XP_309615.2\| ENSANGP00000010172 [Anopheles gambiae str. PEST], gi\|55244576\|gb\|EAA053...	345.0	[0..2]	[258..1]
gi\|114649587 - gi\|114649587\|ref\|XP_509775.2\| PREDICTED: similar to VDRIP isoform 3 [Pan troglodytes] MED4 - mediator complex subunit 4	343.0	[0..6]	[245..25]
MED4_BOVIN - Mediator of RNA polymerase II transcription subunit 4 OS=Bos taurus GN=MED4 PE=2 SV=1	343.0	[0..6]	[245..25]

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Predicted Domain #1

Region A:
Residues: [1-189]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFHLSTKER LLLLIDDIEM IAKELIEQAH QKISSTELVD LLDLLVAKDE EFRKMLELAE  60
   61 EQAKVEEAMD QLRAKVEVHD REIQKLQKSL KDAELILSTA IFQARQKLAS INQANKRPVS 120
  121 SEELIKYAHR ISSANAVSAP LTWCIGDLRR PYPTDIEMRN GLLGKSEQNI NGGTVTHQNS 180
  181 GMPSEQQRT

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.4
Match:	2i1jA
Description:	No description for 2i1jA was found.

Predicted Domain #2

Region A:
Residues: [190-258]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LSGSAGSGSG SGAGGEVPNA FQNQFNWNLG ELHMTMGASG NTVALETRAQ DDVEVMSTDS  60
   61 SSSSSSDSQ

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits