YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|220943996
Organism:	synthetic construct
Length:	297 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|220943996.

Description	E-value	Query Range	Subject Range
gi\|114631777 - gi\|114631777\|ref\|XP_521557.2\| PREDICTED: ribonuclease P (30kD) [Pan troglodytes]	259.0	[0..7]	[262..4]
gi\|109089903 - gi\|109089903\|ref\|XP_001087609.1\| PREDICTED: ribonuclease P (30kD) [Macaca mulatta]	255.0	[0..7]	[262..4]
gi\|60653449 - gi\|60653449\|gb\|AAX29419.1\| ribonuclease P/MRP 30kDa subunit [synthetic construct]	253.0	[0..7]	[262..4]
RPP30 - ribonuclease P/MRP 30kDa subunit gi\|60656497, gi\|... - gi\|60656497\|gb\|AAX32812.1\| ribonuclease P/MRP 30kDa subunit [synthetic construct], gi\|123999957\|gb\|A...	253.0	[0..7]	[262..4]
gi\|109463823, gi... - gi\|109463823\|ref\|XP_001080083.1\| PREDICTED: similar to Ribonuclease P protein subunit p30 (RNaseP pr...	251.0	[0..7]	[262..4]
RPP30_MOUSE - Ribonuclease P protein subunit p30 OS=Mus musculus GN=Rpp30 PE=1 SV=1	250.0	[0..7]	[262..4]
gi\|73997973 - gi\|73997973\|ref\|XP_534959.2\| PREDICTED: similar to Ribonuclease P protein subunit p30 (RNaseP protei...	250.0	[0..7]	[262..4]
RPP30_BOVIN - Ribonuclease P protein subunit p30 OS=Bos taurus GN=RPP30 PE=2 SV=1	248.0	[0..7]	[262..4]
gi\|54645796, gi\|... - gi\|54645796\|gb\|EAL34534.1\| GA11094 [Drosophila pseudoobscura pseudoobscura], gi\|125987403\|ref\|XP_001... gi\|54645796\|gb\|E... - GA11094-PA [Drosophila pseudoobscura], GA11094 [Drosophila pseudoobscura pseudoobscura]	247.0	[0..1]	[297..1]

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Predicted Domain #1

Region A:
Residues: [1-297]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEQTRPFYDF SIPYNKDDSV LRALLNELVE TGYKTVAIDQ SFDHSKKDPG KRGSEMFPEP  60
   61 HKIEHLRKEF QDKLRILQRI TILYVDVNVA HAMSVSHNLR KFNLIAGQPK TDAALTHCCT 120
  121 AFNGDLITFD PVAGSRLLVN RKAYQVAVRR GMFFEIKYAP SICDSNNRKD MIKIAQNYCT 180
  181 KGKSKNVIFS SGAAHEFQLR GPYDVANLAF IFGLSEDQGK NAVDGHCREL FLKAEARRLG 240
  241 KTIMFLKGNG PIIYSDSSED EKSTEDEMKG LKPQIGKADA FEVKDGTEHA IKRLKVA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	16.154902
Match:	1m65A
Description:	Hypothetical protein YcdX
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits