YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|220948008, gi...
Organism:	synthetic construct
Length:	102 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|220948008, gi....

Description	E-value	Query Range	Subject Range
gi\|125982268, gi... - gi\|54643373\|gb\|EAL32117.1\| GA22125-PA [Drosophila pseudoobscura], gi\|125982268\|ref\|XP_001355061.1\| G...	142.0	[0..1]	[102..1]
gi\|58380522, gi\|... - gi\|58380522\|ref\|XP_310602.2\| ENSANGP00000019396 [Anopheles gambiae str. PEST], gi\|55243309\|gb\|EAA064...	125.0	[0..7]	[102..6]
RCF1_PODAN - Respiratory supercomplex factor 1, mitochondrial OS=Podospora anserina (strain S / ATCC MYA-4624 / D... gi\|170940071, gi... - gi\|27764338\|emb\|CAD60618.1\| unnamed protein product [Podospora anserina], gi\|170940071\|emb\|CAP65298....	125.0	[0..14]	[101..6]
gi\|85092704 - gi\|85092704\|ref\|XP_959506.1\| hypothetical protein [Neurospora crassa OR74A] gi\|28920941, gi\|... - gi\|32421567\|ref\|XP_331227.1\| hypothetical protein [Neurospora crassa], gi\|28920941\|gb\|EAA30270.1\| hy...	121.0	[0..14]	[102..30]
HGNC:29527\|Ensem... - hypoxia inducible domain family, member 1A gi\|48146887, gi\|... - gi\|7661620\|ref\|NP_054775.1\| HIG1 domain family, member 1A [Homo sapiens], pir\|\|T14766 hypothetical p... gi\|117646476 - gi\|117646476\|emb\|CAL38705.1\| hypothetical protein [synthetic construct]	121.0	[0..1]	[101..1]
gi\|114603533 - gi\|114603533\|ref\|XP_527130.2\| PREDICTED: hypothetical protein [Pan troglodytes]	119.0	[0..13]	[97..14]
gi\|109041237, gi... - gi\|109041240\|ref\|XP_001115232.1\| PREDICTED: HIG1 domain family, member 1A isoform 3 [Macaca mulatta]...	119.0	[0..1]	[101..1]

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Predicted Domain #1

Region A:
Residues: [1-102]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNKIEVSLP EEELDWIQLR QDLGPVAEVE TTKEKLQRKI KENPLVPLGC LATTAALTAG  60
   61 LYNFRTGNRK MSQLMMRSRI AAQGFTVMAL VVGVVMTYTD KK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	44.60206
Match:	PF04588.4
Description:	No description for PF04588.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits