YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|220944180, gi...
Organism:	synthetic construct
Length:	194 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|220944180, gi....

Description	E-value	Query Range	Subject Range
gi\|54635793\|gb\|E... - GA10115-PA [Drosophila pseudoobscura], GA10115 [Drosophila pseudoobscura pseudoobscura] gi\|194110042, gi... - gi\|195150513\|ref\|XP_002016195.1\| GL10626 [Drosophila persimilis], gi\|194110042\|gb\|EDW32085.1\| GL1062... gi\|125808057, gi... - gi\|54635793\|gb\|EAL25196.1\| GA10115 [Drosophila pseudoobscura pseudoobscura], gi\|125808057\|ref\|XP_001...	247.0	[0..1]	[194..1]
gi\|55234579, gi\|... - gi\|58394010\|ref\|XP_320447.2\| ENSANGP00000016792 [Anopheles gambiae str. PEST], gi\|55234579\|gb\|EAA006... AGAP012083-PA, A... - Trafficking protein particle complex 5\|protein_coding\|3L:37465243:37466058:-1\|gene:AGAP012080, Traff...	239.0	[0..1]	[194..1]
gi\|218188936 - gi\|218188936\|gb\|EEC71363.1\| hypothetical protein OsI_03459 [Oryza sativa Indica Group] gi\|222619145, gi... - gi\|56784761\|dbj\|BAD81934.1\| SPP30-like [Oryza sativa Japonica Group], gi\|56784129\|dbj\|BAD81514.1\| SP...	237.0	[0..7]	[192..2]
gi\|4959712 - gi\|4959712\|gb\|AAD34459.1\|AF136010_1 SPP30 [Solanum chacoense]	234.0	[0..7]	[192..2]
gi\|108881695, gi... - gi\|157132326\|ref\|XP_001656000.1\| hypothetical protein AaeL_AAEL002831 [Aedes aegypti], gi\|108881695\|...	233.0	[0..1]	[194..1]
gi\|21555061, gi\|... - gi\|9759528\|dbj\|BAB10994.1\| unnamed protein product [Arabidopsis thaliana], gi\|28466921\|gb\|AAO44069.1...	232.0	[0..7]	[193..2]
TRS31_SCHPO - Transport protein particle subunit trs31 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=t... trs31 - TRAPP complex subunit Trs31	226.0	[0..5]	[192..15]
gi\|48100981 - gi\|48100981\|ref\|XP_395045.1\| PREDICTED: similar to CG10153-PA [Apis mellifera]	221.0	[0..2]	[194..7]

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Predicted Domain #1

Region A:
Residues: [1-194]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKLEALKIS SMRPRSNILD RPLSKGKTEV SQSIVALLFS EIVQYSQSRV FTVPELQTRL  60
   61 HDLGQDVGTR IIDLYFVRER SSKRETKLTQ MLLFVKTTVW KNLFGKEAEK LEHANDDERT 120
  121 YYIIEKEPLV NTFISVPKDK GSLNCANFTA GIVEAVLTNC GFPCKVTAHW HKGTTYMVKF 180
  181 EDFVIARDKQ MEEK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	55.30103
Match:	2j3wB
Description:	No description for 2j3wB was found.

Predicted functions:

Term	Confidence	Notes
Rab guanyl-nucleotide exchange factor activity	5.6079912636527	bayes_pls_golite062009
binding	1.59771877750275	bayes_pls_golite062009
protein binding	1.1027485517601	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: