YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|220948428, gi...
Organism:	synthetic construct
Length:	204 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|220948428, gi....

Description	E-value	Query Range	Subject Range
gi\|38048131 - gi\|38048131\|gb\|AAR09968.1\| similar to Drosophila melanogaster CG6249 [Drosophila yakuba]	190.0	[0..5]	[204..1]
gi\|125986055, gi... - gi\|54645117\|gb\|EAL33857.1\| GA19469-PA [Drosophila pseudoobscura], gi\|125986055\|ref\|XP_001356791.1\| G...	187.0	[0..2]	[204..1]
gi\|59858307, gi\|... - gi\|62751675\|ref\|NP_001015529.1\| exosomal core protein CSL4 [Bos taurus], gi\|59858307\|gb\|AAX08988.1\| ...	173.0	[0..11]	[197..8]
gi\|57107227 - gi\|57107227\|ref\|XP_534981.1\| PREDICTED: similar to exosome component 1 isoform 1 [Canis familiaris]	173.0	[0..11]	[197..8]
gi\|149040180, gi... - gi\|149040180\|gb\|EDL94218.1\| rCG57589, isoform CRA_a [Rattus norvegicus], gi\|149040177\|gb\|EDL94215.1\|...	172.0	[0..11]	[197..8]
EXOS1_MOUSE - Exosome complex component CSL4 OS=Mus musculus GN=Exosc1 PE=1 SV=1	171.0	[0..11]	[197..8]
gi\|220678445, gi... - gi\|68353788\|ref\|XP_687222.1\| PREDICTED: similar to CGI-108 protein [Danio rerio], gi\|224495967\|ref\|N...	170.0	[0..9]	[197..5]
EXOSC1 - exosome component 1 gi\|114632191 - gi\|114632191\|ref\|XP_507960.2\| PREDICTED: similar to CGI-108 protein [Pan troglodytes] CCDS7459.1_1 - null gi\|208966238 - gi\|208966238\|dbj\|BAG73133.1\| exosome component 1 [synthetic construct] gi\|109090153 - gi\|109090153\|ref\|XP_001103710.1\| PREDICTED: exosome component 1 [Macaca mulatta]	170.0	[0..11]	[197..8]
gi\|55237613, gi\|... - gi\|58389960\|ref\|XP_317396.2\| ENSANGP00000006954 [Anopheles gambiae str. PEST], gi\|55237613\|gb\|EAA126...	168.0	[0..1]	[197..1]
gi\|20089605, gi\|... - gi\|20089605\|ref\|NP_615680.1\| hypothetical protein MA0720 [Methanosarcina acetivorans C2A], gi\|199145...	164.0	[0..3]	[192..123]

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Predicted Domain #1

Region A:
Residues: [1-204]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEQQDETVV CLPGERLCRT EDSIVLGIGT YEQNGYIYAS KSGIVNIEDS GDKCQVVSVH  60
   61 KPGFHLTIPA TGDVVTARVL VTTPKFAKCA IFCVRNVLLE SSYRGLLRKE DVRETEKDRV 120
  121 DIYKSFRPGD VILARVINQL EQSFLLTTAE NELGVVIAYA SDYRKTRVPM VPVGWSEMQC 180
  181 PQTTIKEPRK VAKVLPESSI NAVK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	42.69897
Match:	2nn6I
Description:	No description for 2nn6I was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits