YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|218771942, gi...
Organism:	Pseudomonas aeruginosa LESB58
Length:	295 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|218771942, gi....

Description	E-value	Query Range	Subject Range
gi\|49085592 - gi\|49085592\|gb\|AAT51290.1\| PA2310 [synthetic construct]	1.0E-83	[1..295]	[1..295]
gi\|116050254, gi... - gi\|116050254\|ref\|YP_790929.1\| putative taurine catabolism dioxygenase [Pseudomonas aeruginosa UCBPP-...	8.0E-83	[1..295]	[1..295]
gi\|67088539, gi\|... - gi\|67154406\|ref\|ZP_00416151.1\| Taurine dioxygenase [Azotobacter vinelandii AvOP], gi\|67088539\|gb\|EAM... gi\|67154406 - gi\|67154406\|ref\|ZP_00416151.1\| Taurine dioxygenase [Azotobacter vinelandii AvOP]	3.0E-82	[1..295]	[1..295]
gi\|82737867, gi\|... - gi\|82737867\|ref\|ZP_00900711.1\| dioxygenase, TauD/TfdA family [Pseudomonas putida F1], gi\|82715106\|gb...	4.0E-82	[1..295]	[1..299]
gi\|26986913, gi\|... - gi\|26986913\|ref\|NP_742338.1\| TauD/TfdA family dioxygenase [Pseudomonas putida KT2440], gi\|24981522\|g...	6.0E-82	[1..295]	[1..299]
gi\|77456365, gi\|... - gi\|77456365\|ref\|YP_345870.1\| taurine catabolism dioxygenase TauD/TfdA [Pseudomonas fluorescens Pf0-1...	3.0E-81	[13..295]	[16..298]
gi\|28872310, gi\|... - gi\|28872310\|ref\|NP_794929.1\| TauD/TfdA family dioxygenase [Pseudomonas syringae pv. tomato str. DC30... tr\|Q87UU4\|Q87UU4... - Dioxygenase, TauD/TfdA family OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=PSPTO_5198 PE=4 ...	6.0E-81	[2..295]	[5..298]
gi\|70733644, gi\|... - gi\|70733644\|ref\|YP_257284.1\| taurine catabolism dioxygenase TauD [Pseudomonas fluorescens Pf-5], gi\|...	9.0E-81	[15..295]	[15..295]
gi\|224164843, gi... - gi\|224164843\|ref\|XP_002338736.1\| predicted protein [Populus trichocarpa], gi\|222873366\|gb\|EEF10497.1... gi\|68554422, gi\|... - gi\|94313063\|ref\|YP_586272.1\| taurine catabolism dioxygenase TauD/TfdA [Ralstonia metallidurans CH34]...	1.0E-79	[4..295]	[17..308]
gi\|84327348 - gi\|84327348\|ref\|ZP_00975369.1\| COG2175: Probable taurine catabolism dioxygenase [Pseudomonas aerugin... gi\|84320886 - gi\|84320886\|ref\|ZP_00969253.1\| COG2175: Probable taurine catabolism dioxygenase [Pseudomonas aerugin...	7.0E-79	[15..295]	[1..281]

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Predicted Domain #1

Region A:
Residues: [1-295]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVSLPAPAR ADVPLQIRAL DAAFGAEVLG LDLGLPLAAE DFRRIHRAHL DHHVLVFREQ  60
   61 RITPAQQIAF SRRFGELQIH VLKQFLLPGH PEILIVSNIV ENGQPIGLGD AGKFWHSDLS 120
  121 YKELPSLGSM LHAQELPEEG GDTLFADMHK AWDSLPEALR KAIEGRTAAH SYTARYSEPR 180
  181 FEGNWRPTLS AAQLAEVREV VHPIVRTHPE SGRKALFVSE GFTTRIVGLP ADESAQLLAE 240
  241 LYAHSVRPEH IYRHRWQAHD LVFWDNRSLI HLAGGCPAHL RRKLYRTTIQ GDAPF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	72.522879
Match:	1gqwA
Description:	Taurine/alpha-ketoglutarate dioxygenase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	1.41007985416065	bayes_pls_golite062009
catalytic activity	1.29176034651701	bayes_pls_golite062009
oxidoreductase activity	0.95783232811757	bayes_pls_golite062009
taurine dioxygenase activity	0.594076608400231	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: