YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|220944484, gi...
Organism:	synthetic construct
Length:	295 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|220944484, gi....

Description	E-value	Query Range	Subject Range
gi\|125774497, gi... - gi\|54638244\|gb\|EAL27646.1\| GA20778 [Drosophila pseudoobscura pseudoobscura], gi\|125774497\|ref\|XP_001... gi\|54638244\|gb\|E... - GA20778-PA [Drosophila pseudoobscura], GA20778 [Drosophila pseudoobscura pseudoobscura]	407.0	[0..1]	[294..1]
AGAP010011-PA - Protein MEMO1\|protein_coding\|3R:47581200:47582329:-1\|gene:AGAP010011 gi\|58392176, gi\|... - gi\|58392176\|ref\|XP_319155.2\| AGAP010011-PA [Anopheles gambiae str. PEST], gi\|55236230\|gb\|EAA13930.2\|...	405.0	[0..4]	[294..6]
gi\|108872303, gi... - gi\|157167680\|ref\|XP_001661638.1\| hypothetical protein AaeL_AAEL011394 [Aedes aegypti], gi\|108872303\|...	400.0	[0..1]	[294..1]
MEMO1_XENLA - Protein MEMO1 OS=Xenopus laevis GN=memo1 PE=2 SV=1	391.0	[0..3]	[292..7]
MEMO1_DANRE - Protein MEMO1 OS=Danio rerio GN=memo1 PE=2 SV=1	390.0	[0..1]	[292..5]
gi\|91094281 - gi\|91094281\|ref\|XP_970827.1\| PREDICTED: similar to CG8031 CG8031-PA [Tribolium castaneum]	390.0	[0..1]	[294..1]
MEMO1_XENTR - Protein MEMO1 OS=Xenopus tropicalis GN=memo1 PE=2 SV=1	390.0	[0..3]	[292..7]
gi\|114576869 - gi\|114576869\|ref\|XP_001164110.1\| PREDICTED: chromosome 2 open reading frame 4 isoform 3 [Pan troglod... MEMO1 - mediator of cell motility 1 gi\|123982438, gi... - gi\|123997099\|gb\|ABM86151.1\| chromosome 2 open reading frame 4 [synthetic construct], gi\|123982438\|gb... gi\|126303134 - gi\|126303134\|ref\|XP_001371460.1\| PREDICTED: similar to CGI-27 protein [Monodelphis domestica] MEMO1_MACFA - Protein MEMO1 OS=Macaca fascicularis GN=MEMO1 PE=2 SV=1	389.0	[0..3]	[291..7]
gi\|50740689 - gi\|50740689\|ref\|XP_419531.1\| PREDICTED: similar to CGI-27 protein [Gallus gallus]	388.0	[0..3]	[291..7]
MEMO1_MOUSE - Protein MEMO1 OS=Mus musculus GN=Memo1 PE=1 SV=1	388.0	[0..3]	[291..7]

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Predicted Domain #1

Region A:
Residues: [1-295]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSARRATHAG SWYTDSGAEL SRQLDRWLGA ADLSHGPARA IIAPHAGYTY CGACAAFAYR  60
   61 QVSPVVVKRI FILGPSHHVR LRGCALSVAK KYRTPLYDLK IDAQINSELE KTGKFSWMDM 120
  121 KTDEDEHSIE MHLPYIAKVM EDYKDQFTIV PILVGSLNPE QEAQYGSLLS SYLMDPTNLF 180
  181 VISSDFCHWG HRFSYTYYDS SCGAIHKSIE KLDKQGMDII ESLNPHSFTE YLRKYNNTIC 240
  241 GRHPIGVMLG AVKALQDQGY DKMSFKFLKY AQSSQCQDIE DSSVSYASGS LVFEM

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	18.0
Match:	2pw6A
Description:	No description for 2pw6A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits