YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|220965643, gi...
Organism: Caulobacter crescentus NA1000
Length: 328 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|220965643, gi....

Description E-value Query
Range
Subject
Range
3825.m02509, 128... - /numExons=12 /strand=- /begin=98461 /end=104446 /seqFile=euttg.scaffolds.fasta /startCodon=0 /coords...
gi|89295687, gi|... - gi|89295687|gb|EAR93675.1| 4-hydroxybenzoate polyprenyl transferase family protein [Tetrahymena ther...
239.0 [0..31] [325..966]

Back

Predicted Domain #1
Region A:
Residues: [1-212]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRARRSQVK PRRMTAAQSP PGVLPDAAAT NWVDRHAPQR LRPWLKLGRF DRPVGIWLLM  60
   61 LPGWQGIALA AAEQGRWPNP LLLLAVFVGA ALMRAAGCAF NDIVDRDFDA QVARTAMRPI 120
  121 PAGLISVKQA WLFVVGCCGV SFLILICLGW TAILLGVLSL ALVAAYPFMK RITWWPQAWL 180
  181 GLTFNWGALL GYAAATGHLS WSAALLYASG IF

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [213-328]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 WTLGYDTIYA IQDIEDDALA GIKSSTRRLG QHVQIGVAGF YLVSFILLVI AGWMGDIGPL  60
   61 FLPLAALFAL HLSRQAAAVR IEDGPGALKL FKSNALAGLL VFAGLVAGLW KPGVSF

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle