YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|220954288, gi...
Organism:	synthetic construct
Length:	148 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|220954288, gi....

Description	E-value	Query Range	Subject Range
mge-PB - The gene maggie is referred to in FlyBase by the symbol Dmel\mge (CG14981, FBgn0035473). It is a pro...	173.0	[0..32]	[148..6]
gi\|42549474, gi\|... - gi\|46116546\|ref\|XP_384291.1\| hypothetical protein FG04115.1 [Gibberella zeae PH-1], gi\|42549474\|gb\|E...	159.0	[0..1]	[143..4]
gi\|54641166, gi\|... - gi\|54641166\|gb\|EAL29916.1\| GA13402 [Drosophila pseudoobscura pseudoobscura], gi\|125976774\|ref\|XP_001... gi\|54641166\|gb\|E... - GA13402-PA [Drosophila pseudoobscura], GA13402 [Drosophila pseudoobscura pseudoobscura]	154.0	[0..1]	[148..1]
gi\|41581261 - gi\|41581261\|emb\|CAE47910.1\| mitochondrial import receptor subunit tom22 homologue, putative [Aspergi...	150.0	[0..1]	[142..4]
TOM22_NEUCR, OM2... - Mitochondrial import receptor subunit tom-22 OS=Neurospora crassa GN=tom-22 PE=2 SV=1, (Q07335) Mito... TOM22_NEUCR - Mitochondrial import receptor subunit tom22 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / C...	145.0	[0..1]	[139..4]
gi\|91090252 - gi\|91090252\|ref\|XP_969934.1\| PREDICTED: similar to maggie CG14981-PA [Tribolium castaneum]	139.0	[0..10]	[148..5]
gi\|70995594, gi\|... - gi\|70995594\|ref\|XP_752552.1\| mitochondrial import receptor subunit tom22 [Aspergillus fumigatus Af29... gi\|159131307 - gi\|159131307\|gb\|EDP56420.1\| mitochondrial import receptor subunit tom22 [Aspergillus fumigatus A1163...	136.0	[0..1]	[134..4]
gi\|123999460, gi... - gi\|123999460\|gb\|ABM87288.1\| translocase of outer mitochondrial membrane 22 homolog (yeast) [syntheti... gi\|109094198 - gi\|109094198\|ref\|XP_001094369.1\| PREDICTED: similar to Mitochondrial import receptor subunit TOM22 h... TOMM22 - translocase of outer mitochondrial membrane 22 homolog (yeast) TOM22_MACFA - Mitochondrial import receptor subunit TOM22 homolog OS=Macaca fascicularis GN=TOMM22 PE=2 SV=3 gi\|114686396, gi... - gi\|114686398\|ref\|XP_001163697.1\| PREDICTED: similar to mitochondrial import receptor Tom22 isoform 1... HGNC:18002\|MIM:6... - of outer mitochondrial membrane 22 homolog (yeast)	131.0	[0..23]	[146..12]
gi\|57091773 - gi\|57091773\|ref\|XP_548243.1\| PREDICTED: similar to Mitochondrial import receptor subunit TOM22 homol...	129.0	[0..14]	[146..2]
gi\|116126280, gi... - gi\|118786353\|ref\|XP_315384.2\| ENSANGP00000021073 [Anopheles gambiae str. PEST], gi\|116126280\|gb\|EAA1...	129.0	[0..1]	[129..1]

Back

Predicted Domain #1

Region A:
Residues: [1-148]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSDPEIEFI EKDSGMSSLG GSKDETPERR AVAATSNDPQ RENYDDEPDE TASERFWGLT  60
   61 EMFPEPVRNA VGAVSSATVK SVKGFYSFSC NASWIFFTSA VILFAPVIFE TERAQMEELH 120
  121 KSQQKQVLLG PGSAMGPGGP SPSLPLIR

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits