YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|220958848, gi...
Organism:	synthetic construct
Length:	202 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|220958848, gi....

Description	E-value	Query Range	Subject Range
gi\|109093199 - gi\|109093199\|ref\|XP_001107106.1\| PREDICTED: similar to DNA replication complex GINS protein PSF1 [Ma...	302.0	[0..3]	[201..61]
gi\|40788899 - gi\|40788899\|dbj\|BAA11503.2\| KIAA0186 [Homo sapiens]	299.0	[0..5]	[201..29]
PSF1_MOUSE - DNA replication complex GINS protein PSF1 OS=Mus musculus GN=Gins1 PE=1 SV=1	296.0	[0..7]	[201..1]
GINS1 - GINS complex subunit 1 (Psf1 homolog) gi\|168274446 - gi\|168274446\|dbj\|BAG09643.1\| DNA replication complex GINS protein PSF1 [synthetic construct] gi\|114681346 - gi\|114681346\|ref\|XP_514558.2\| PREDICTED: similar to KIAA0186 isoform 2 [Pan troglodytes]	295.0	[0..7]	[201..1]
gi\|62859211, gi\|... - gi\|62859211\|ref\|NP_001016164.1\| GINS complex subunit 1 [Xenopus (Silurana) tropicalis], gi\|213627123...	294.0	[0..7]	[201..1]
gi\|109471018, gi... - gi\|62646037\|ref\|XP_575258.1\| PREDICTED: similar to DNA replication complex GINS protein PSF1 [Rattus...	294.0	[0..7]	[201..1]
gi\|73989584 - gi\|73989584\|ref\|XP_848652.1\| PREDICTED: similar to DNA replication complex GINS protein PSF1 isoform...	293.0	[0..7]	[201..1]
gi\|29365479, gi\|... - gi\|49115013\|gb\|AAH72857.1\| MGC80254 protein [Xenopus laevis], gi\|29365479\|dbj\|BAC66458.1\| Psf1 [Xeno...	292.0	[0..7]	[201..1]

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Predicted Domain #1

Region A:
Residues: [1-202]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRQTKMFGE KAFDLLKELE RSSQTIPAFD DDGVRQVLEE IKAIFEENVA QASSYNASGD  60
   61 RSLWPLLNFR HAALQRNKRC LLAYLYERCR RIKALRWEFG PIIPGDIKQA LCEPEVTFFN 120
  121 NYSKSLAAYM CSAGYNQGLP IDLTNNLRPP KSLYIEVRCM EDYGKFELDD GEVIHLKKNS 180
  181 QHYLPRAQVE SLVRQGILHH IA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	80.154902
Match:	2q9qC
Description:	No description for 2q9qC was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits