YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|220944588, gi...
Organism:	synthetic construct
Length:	195 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|220944588, gi....

Description	E-value	Query Range	Subject Range
gi\|73974148 - gi\|73974148\|ref\|XP_857082.1\| PREDICTED: similar to Polyadenylate-binding protein 1 (Poly(A)-binding ...	135.0	[0..21]	[195..292]
gi\|109098676 - gi\|109098676\|ref\|XP_001096930.1\| PREDICTED: poly(A) binding protein, cytoplasmic 1 [Macaca mulatta]	135.0	[0..21]	[195..252]
gi\|13435438 - gi\|13435438\|gb\|AAH04587.1\| Pabpc1 protein [Mus musculus]	133.0	[0..21]	[195..183]
PABP1_RAT - Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=1 SV=1	133.0	[0..21]	[195..292]
gi\|197097606 - gi\|197097606\|ref\|NP_001126097.1\| poly(A) binding protein, cytoplasmic 1 [Pongo abelii] gi\|55730342 - gi\|55730342\|emb\|CAH91893.1\| hypothetical protein [Pongo abelii]	133.0	[0..21]	[195..292]

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Predicted Domain #1

Region A:
Residues: [1-112]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNGGGAGGL GAARPPPRID GMVSLKVDNL TYRTTPEDLR RVFERCGEVG DIYIPRDRYT  60
   61 RESRGFAFVR FYDKRDAEDA LEAMDGRMLD GRELRVQMAR YGRPSSPTRS SS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	12.39794
Match:	2dnmA
Description:	No description for 2dnmA was found.

Predicted Domain #2

Region A:
Residues: [113-195]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GRRGGGGGGG SGGRRRSRSR SPMRRRSRSP RRRSYSRSRS PGSHSPERRS KFSRSPVRGD  60
   61 SRNGIGSGSG GLAPAASRSR SRS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits