YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|218694790, gi...
Organism:	Escherichia coli 55989
Length:	83 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|218694790, gi....

Description	E-value	Query Range	Subject Range
gi\|169755015, gi... - gi\|170020087\|ref\|YP_001725041.1\| hypothetical protein EcolC_2074 [Escherichia coli ATCC 8739], gi\|16... EG11129 - Qin prophage; uncharacterized protein / Function unknown, Qin prophage; downstream of relF gene REM_ECOLI - Hypothetical rem protein - Escherichia coli gi\|124498146, gi... - gi\|124532141\|ref\|ZP_01702120.1\| conserved hypothetical protein [Escherichia coli B], gi\|124498146\|gb... gi\|218360891, gi... - gi\|218554123\|ref\|YP_002387036.1\| conserved hypothetical protein; Qin prophage [Escherichia coli IAI1... gi\|238900781, gi... - gi\|238900781\|ref\|YP_002926577.1\| Qin prophage; hypothetical protein [Escherichia coli BW2952], gi\|23... gi\|193066938, gi... - gi\|193066938\|ref\|ZP_03047907.1\| conserved hypothetical protein [Escherichia coli E110019], gi\|192959... EG11129 - Qin prophage; uncharacterized protein / Function unknown, Qin prophage; downstream of relF gene gi\|169889063, gi... - gi\|170081228\|ref\|YP_001730548.1\| Qin prophage; protein [Escherichia coli str. K-12 substr. DH10B], g... gi\|89108403, gi\|... - gi\|89108403\|ref\|AP_002183.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|174...	150.0	[0..1]	[83..1]
gi\|30041297, gi\|... - gi\|30063048\|ref\|NP_837219.1\| hypothetical protein S1667 [Shigella flexneri 2a str. 2457T], gi\|300412... gi\|56383473, gi\|... - gi\|56479922\|ref\|NP_707429.2\| hypothetical protein SF1547 [Shigella flexneri 2a str. 301], gi\|5638347...	149.0	[0..2]	[83..1]
gi\|193066817, gi... - gi\|75254907\|ref\|ZP_00726871.1\| hypothetical protein EcolE2_01004892 [Escherichia coli E22], gi\|19306...	141.0	[0..2]	[83..1]
gi\|25302284 - pir\|\|F90850 hypothetical protein ECs1774 [imported] - Escherichia coli (strain O157:H7, substrain R... gi\|254792742, gi... - gi\|254792806\|ref\|YP_003077643.1\| hypothetical protein ECSP_1735 [Escherichia coli O157:H7 str. TW143... gi\|209395841, gi... - gi\|209400387\|ref\|YP_002270269.1\| hypothetical protein ECH74115_1842 [Escherichia coli O157:H7 str. E... gi\|13361239, gi\|... - gi\|15831028\|ref\|NP_309801.1\| hypothetical protein ECs1774 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|208819247, gi... - gi\|208819247\|ref\|ZP_03259567.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042... gi\|13361239, gi\|... - gi\|15831028\|ref\|NP_309801.1\| hypothetical protein ECs1774 [Escherichia coli O157:H7], gi\|13361239\|db... gi\|217318655, gi... - gi\|217328228\|ref\|ZP_03444310.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. TW1458... gi\|195940679 - gi\|195940679\|ref\|ZP_03086061.1\| hypothetical protein EscherichcoliO157_30518 [Escherichia coli O157:... gi\|189375201, gi... - gi\|189375201\|gb\|EDU93617.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508], gi... gi\|208731465, gi... - gi\|208815339\|ref\|ZP_03256518.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045... gi\|208811019, gi... - gi\|208811019\|ref\|ZP_03252852.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4206... gi\|168771853, gi... - gi\|189359491\|gb\|EDU77910.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486], g... gi\|189354260, gi... - gi\|189354260\|gb\|EDU72679.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401], g... gi\|168784375, gi... - gi\|188998947\|gb\|EDU67933.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076], g... gi\|168778164, gi... - gi\|187766799\|gb\|EDU30643.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196], g... gi\|168752685, gi... - gi\|188013570\|gb\|EDU51692.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113], g...	139.0	[0..2]	[82..1]
gi\|12515002, gi\|... - gi\|15801500\|ref\|NP_287517.1\| hypothetical protein Z2055 [Escherichia coli O157:H7 EDL933], gi\|125150... gi\|25302283 - pir\|\|E85708 unknown protein encoded by prophage CP-933O [imported] - Escherichia coli (strain O157:H...	137.0	[0..2]	[82..1]
gi\|73854763, gi\|... - gi\|74311286\|ref\|YP_309705.1\| hypothetical protein SSON_0720 [Shigella sonnei Ss046], gi\|73854763\|gb\|... gi\|187427745, gi... - gi\|187730753\|ref\|YP_001880190.1\| hypothetical protein SbBS512_E1596 [Shigella boydii CDC 3083-94], g... gi\|82775923, gi\|... - gi\|82775923\|ref\|YP_402270.1\| hypothetical protein SDY_0581 [Shigella dysenteriae Sd197], gi\|81240071...	129.0	[0..2]	[77..1]
gi\|24051138, gi\|... - gi\|24112284\|ref\|NP_706794.1\| hypothetical protein SF0868 [Shigella flexneri 2a str. 301], gi\|2405113... gi\|110804755, gi... - gi\|110804755\|ref\|YP_688275.1\| hypothetical protein SFV_0735 [Shigella flexneri 5 str. 8401], gi\|1106...	129.0	[0..2]	[77..1]

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Predicted Domain #1

Region A:
Residues: [1-83]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMNIEELRKI FCEDGLYAVC VENGNIVSHY RIVCLQKNGA ALINFVDARV TDGFILRDGE  60
   61 FVTSLQALKE IGIKAGFSAF SEE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits