YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|220958524
Organism:	synthetic construct
Length:	261 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|220958524.

Description	E-value	Query Range	Subject Range
gi\|21464462 - gi\|21464462\|gb\|AAM52034.1\| RH58440p [Drosophila melanogaster]	341.0	[0..1]	[261..41]
gi\|58378566, gi\|... - gi\|58378566\|ref\|XP_308531.2\| ENSANGP00000015975 [Anopheles gambiae str. PEST], gi\|55245598\|gb\|EAA040...	299.0	[0..4]	[261..2]
gi\|54643153, gi\|... - gi\|54643153\|gb\|EAL31897.1\| GA18337 [Drosophila pseudoobscura pseudoobscura], gi\|125981677\|ref\|XP_001... gi\|125981677\|ref... - GA18337-PA [Drosophila pseudoobscura], GA18337 [Drosophila pseudoobscura pseudoobscura]	298.0	[0..1]	[261..1]
gi\|108872190, gi... - gi\|157129475\|ref\|XP_001661693.1\| hypothetical protein AaeL_AAEL011492 [Aedes aegypti], gi\|108872190\|...	259.0	[0..4]	[261..2]
gi\|70995666, gi\|... - gi\|70995666\|ref\|XP_752588.1\| conserved hypothetical protein [Aspergillus fumigatus Af293], gi\|668502... gi\|19309401, gi\|... - gi\|41581298\|emb\|CAE47947.1\| hypothetical protein, conserved [Aspergillus fumigatus], gi\|19309401\|emb...	254.0	[0..15]	[258..35]
gi\|40747048, gi\|... - gi\|67517813\|ref\|XP_658690.1\| hypothetical protein AN1086.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	222.0	[0..41]	[258..409]

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Predicted Domain #1

Region A:
Residues: [1-171]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEQLCYLALS VLLAIIVVYG LLELHYFLRM CLCVLLARFV KRRCHILDTT TVNGLCLTND  60
   61 VDTLLYHMNN ARYFRELDFA RVDFYERTNL YRTITGMGGS VFQGAATIRY RRFIRPFHRF 120
  121 NIISRIIYWD EQSLFMEHRF VRPSDKFVHC IAICRQRVID VSMEAVMSEL L

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	4.30103
Match:	1njkA
Description:	Hypothetical protein YbaW
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.215996736903871	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [172-261]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PRTSSNGFRA TVLTSLAAPS PAAGGISNPA MDTSLAENGH GTTSGGAAGT GATASATAAH  60
   61 CLKLKPSLPP ELAKWIEYND MSSKNLRSGC

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: