YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|220959072, gi...
Organism:	synthetic construct
Length:	240 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|220959072, gi....

Description	E-value	Query Range	Subject Range
gi\|125979739\|ref... - GA20275-PA [Drosophila pseudoobscura], GA20275 [Drosophila pseudoobscura pseudoobscura] gi\|125979739, gi... - gi\|54640887\|gb\|EAL29638.1\| GA20275 [Drosophila pseudoobscura pseudoobscura], gi\|125979739\|ref\|XP_001...	188.0	[0..1]	[240..1]
gi\|13359203 - gi\|13359203\|dbj\|BAB33335.1\| KIAA1665 protein [Homo sapiens]	180.0	[0..1]	[215..14]
gi\|109094365, gi... - gi\|109094365\|ref\|XP_001105322.1\| PREDICTED: similar to polymerase (RNA) III (DNA directed) polypepti... gi\|90077470 - gi\|90077470\|dbj\|BAE88415.1\| unnamed protein product [Macaca fascicularis]	173.0	[0..1]	[215..1]
gi\|190409694 - gi\|190409694\|gb\|EDV12959.1\| DNA-directed RNA polymerase III 25 kDa polypeptide [Saccharomyces cerevi... gi\|151941663 - gi\|151941663\|gb\|EDN60025.1\| RNA polymerase C [Saccharomyces cerevisiae YJM789] RPC8_YEAST - DNA-directed RNA polymerase III subunit RPC8 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c... RPC25 - RNA polymerase III subunit C25, required for transcription initiation; forms a heterodimer with Rpc1...	173.0	[0..1]	[213..1]
gi\|44981491 - gi\|44981491\|gb\|AAS51276.1\| ACR049Wp [Ashbya gossypii ATCC 10895] gi\|45185736, gi\|... - gi\|45185736\|ref\|NP_983452.1\| ACR049Wp [Ashbya gossypii ATCC 10895], gi\|44981491\|gb\|AAS51276.1\| ACR04...	172.0	[0..1]	[213..1]
gi\|108871791, gi... - gi\|157130759\|ref\|XP_001661998.1\| DNA-directed RNA polymerase III 25 kDa polypeptide [Aedes aegypti],...	169.0	[0..1]	[212..1]
gi\|91092914 - gi\|91092914\|ref\|XP_971430.1\| PREDICTED: similar to DNA-directed RNA polymerase III 25 kDa polypeptid...	169.0	[0..1]	[214..1]
gi\|74220193 - gi\|74220193\|dbj\|BAE31279.1\| unnamed protein product [Mus musculus]	168.0	[0..1]	[215..1]

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Predicted Domain #1

Region A:
Residues: [1-240]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFVLAELKDN VRIAPDQFHL KLVDAVRDEI DRKLANKVLL NVGLCIALKD IVSLKDSIIL  60
   61 PGDGASHTEV LFRYVVFRPM VGTVITGKIR NCSREGVHVT LGFFDDILIP HAALQHPSRF 120
  121 DEAEQAWVWE YPLEDGAKHD LFMDVGEPIK FRVSREIFEE TSPIGPPKTE AQTQQGASTS 180
  181 AAVASATSQE VKTPYRIIGA INESGLGVLS WWDQQGKDDE QDDEEDEEYD DEDGEGACEE 240
  241

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	43.30103
Match:	2ckzB
Description:	No description for 2ckzB was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits