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View Structure Prediction Details

Protein: gi|220950918, gi...
Organism: synthetic construct
Length: 334 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|220950918, gi....

Description E-value Query
Range
Subject
Range
gi|109043040 - gi|109043040|ref|XP_001096828.1| PREDICTED: similar to RP42 homolog [Macaca mulatta]
389.0 [0..8] [303..8]

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Predicted Domain #1
Region A:
Residues: [1-94]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGNCLKCFQS AAEQSMPTNA SSPNSHNSNS NACQTATSLA NCYESVGINP NANERCALET  60
   61 DELLSSRTPL KPAKANNCDT KRNSFKSLGL LNGS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [95-334]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 APTMSDIITT AVQESMEVSH QTLSKLFDVY KDPDDEEMIL TDGIERLCND LNYQPDEFAI  60
   61 LVLAWCLDAS QMCRFTKVEF IEGLHKMRAD TIDSIRVRLE QTIEMLKADA EMFKQLYRFT 120
  121 FRFGLEPDQR VLSLEMAIDL WKLVFTVQTP DLFSNWIHFL EKHPNIRRIP KDTWNMYLNF 180
  181 TEQCDIQNYD DTEAWPSLFD DFVDYEKSRA LVSSGIHDDD NNNDDPLQSH VKAEDPGLVS 240
  241 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 47.154902
Match: 2is9A
Description: No description for 2is9A was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle