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View Structure Prediction Details

Protein: gi|220942424
Organism: synthetic construct
Length: 249 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|220942424.

Description E-value Query
Range
Subject
Range
gi|109084155 - gi|109084155|ref|XP_001082932.1| PREDICTED: mediator of RNA polymerase II transcription, subunit 6 h...
CCDS9805.1_1 - null
357.0 [0..1] [249..1]

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Predicted Domain #1
Region A:
Residues: [1-173]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASRQMTNDH LRLSWHDTQM MATLSPQTVM DYFCRKSNPF YDHMCNNETV RMQRLGPEHL  60
   61 HNMIGLEYIL LHVAEPILYV IRKQHRHNPS EATPIADYYI IGGTVYKAPD LANVINSRIL 120
  121 NTVVNLQSAF EEASSYARYH PNKGYTWDFS SNKVFSDRSK SDKKDANSAK DEN

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 63.187087
Match: PF04934.5
Description: No description for PF04934.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [174-249]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SGTLFQKQRV DMLLAELLRK FPPPIPPMLQ NLQQPPPAGD DLNTARNASE MNNATGPLDI  60
   61 KTEGVDMKPP PEKKSK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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