YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|218893579, gi...
Organism:	Pseudomonas aeruginosa LESB58
Length:	263 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|218893579, gi....

Description	E-value	Query Range	Subject Range
gi\|107099928 - gi\|107099928\|ref\|ZP_01363846.1\| hypothetical protein PaerPA_01000949 [Pseudomonas aeruginosa PACS2]	0.0	[1..263]	[15..277]
gi\|116052519, gi... - gi\|116052519\|ref\|YP_792832.1\| hypothetical protein PA14_58230 [Pseudomonas aeruginosa UCBPP-PA14], g...	0.0	[1..263]	[1..263]
gi\|49083008 - gi\|49083008\|gb\|AAT50904.1\| PA4487 [synthetic construct]	0.0	[1..263]	[1..263]
gi\|84322980 - gi\|84322980\|ref\|ZP_00971057.1\| COG4676: Uncharacterized protein conserved in bacteria [Pseudomonas a...	0.0	[4..263]	[1..260]
gi\|84316960 - gi\|84316960\|ref\|ZP_00965417.1\| COG4676: Uncharacterized protein conserved in bacteria [Pseudomonas a...	0.0	[4..263]	[1..260]
gi\|94416235 - gi\|94416235\|ref\|ZP_01296065.1\| hypothetical protein PaerP_01002078 [Pseudomonas aeruginosa PA7]	0.0	[4..263]	[1..260]
gi\|48728949, gi\|... - gi\|77461219\|ref\|YP_350726.1\| hypothetical protein Pfl01_4998 [Pseudomonas fluorescens Pf0-1], gi\|773...	0.0	[4..263]	[10..270]
gi\|253974138, gi... - gi\|254162237\|ref\|YP_003045345.1\| hypothetical protein ECB_02152 [Escherichia coli B str. REL606], gi... EG14078 - DUF2135 family protein, putative host defense protein / DUF2135 family protein, function unknown; pr... gi\|170081845, gi... - gi\|170081845\|ref\|YP_001731165.1\| hypothetical protein ECDH10B_2383 [Escherichia coli str. K-12 subst... gi\|170019461, gi... - gi\|170019461\|ref\|YP_001724415.1\| hypothetical protein EcolC_1425 [Escherichia coli ATCC 8739], gi\|16... gi\|124526394, gi... - gi\|124526394\|ref\|ZP_01698347.1\| conserved hypothetical protein [Escherichia coli B], gi\|124501865\|gb... gi\|85675318, gi\|... - gi\|89109044\|ref\|AP_002824.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|856... YFAP_ECOLI - Hypothetical protein yfaP precursor - Escherichia coli gi\|75196268, gi\|... - gi\|75196268\|ref\|ZP_00706338.1\| COG4676: Uncharacterized protein conserved in bacteria [Escherichia c... EG14078 - DUF2135 family protein, putative host defense protein / DUF2135 family protein, function unknown; pr... gi\|194425069, gi... - gi\|83588211\|ref\|ZP_00926836.1\| COG4676: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|238860341, gi... - gi\|238901400\|ref\|YP_002927196.1\| hypothetical protein BWG_1999 [Escherichia coli BW2952], gi\|2388603... gi\|242377861, gi... - gi\|251785588\|ref\|YP_002999892.1\| hypothetical protein B21_02111 [Escherichia coli BL21], gi\|24237786... gi\|253772851, gi... - gi\|254288998\|ref\|YP_003054746.1\| hypothetical protein ECD_02152 [Escherichia coli BL21(DE3)], gi\|253...	0.0	[1..262]	[1..258]
gi\|15832362, gi\|... - gi\|15832362\|ref\|NP_311135.1\| hypothetical protein ECs3108 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|110806193, gi... - gi\|110806193\|ref\|YP_689713.1\| hypothetical protein SFV_2294 [Shigella flexneri 5 str. 8401], gi\|1106... gi\|217327541, gi... - gi\|217327541\|ref\|ZP_03443624.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. TW1458... gi\|188487327, gi... - gi\|75514408\|ref\|ZP_00736686.1\| COG4676: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|24052659, gi\|... - gi\|24113604\|ref\|NP_708114.1\| hypothetical protein SF2303 [Shigella flexneri 2a str. 301], gi\|2405265... gi\|25340948, gi\|... - pir\|\|F85861 hypothetical protein Z3478 [imported] - Escherichia coli (strain O157:H7, substrain EDL... gi\|15832362, gi\|... - gi\|15832362\|ref\|NP_311135.1\| hypothetical protein ECs3108 [Escherichia coli O157:H7], gi\|13362577\|db... gi\|30063658, gi\|... - gi\|30063658\|ref\|NP_837829.1\| hypothetical protein S2434 [Shigella flexneri 2a str. 2457T], gi\|300419... gi\|15802772, gi\|... - gi\|15802772\|ref\|NP_288799.1\| hypothetical protein Z3478 [Escherichia coli O157:H7 EDL933], gi\|125165... gi\|189372846, gi... - gi\|189372846\|gb\|EDU91262.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869], gi... gi\|168761343, gi... - gi\|189368286\|gb\|EDU86702.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501], g... gi\|194433351, gi... - gi\|194433351\|ref\|ZP_03065631.1\| conserved hypothetical protein [Shigella dysenteriae 1012], gi\|19441... gi\|189378947, gi... - gi\|189378947\|gb\|EDU97363.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508], gi...	0.0	[1..262]	[1..258]
gi\|74312747, gi\|... - gi\|74312747\|ref\|YP_311166.1\| hypothetical protein SSON_2284 [Shigella sonnei Ss046], gi\|73856224\|gb\|...	0.0	[1..262]	[1..258]

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Predicted Domain #1

Region A:
Residues: [1-127]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNRMSLAALL SCLPLVAWAD NPVKLDTPVS GWRAGDGSAA NYRQVVNYPA SSVNVAADQA  60
   61 TTARIRGAIE SQPKDRPATL VVNGVSMPLK VDADGSFDRP FAFPSGSNSV EVRNAAGQSR 120
  121 RVQFYHG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [128-263]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GGGGEVPAKL RVLLSWDSDN TDLDLHLVTP DGDHVWYGNR SLANGATLDV DVTTGYGPEI  60
   61 IATPTPQKGP YLVYVNYFGG GYGSSEDGAE QAAQDLTTAR ITLVTEEGTP NEKQETFLVP 120
  121 MRKPGELTLV KRFSYP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.519	N/A	N/A	b.60.1	Lipocalins
View	Download	0.418	N/A	N/A	b.2.2	Carbohydrate-binding domain
View	Download	0.417	N/A	N/A	d.24.1	Pili subunits
View	Download	0.416	N/A	N/A	f.4.1	OMPA-like
View	Download	0.394	N/A	N/A	b.1.12	Purple acid phosphatase, N-terminal domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits