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View Structure Prediction Details

Protein: gi|220960464, gi...
Organism: synthetic construct
Length: 336 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|220960464, gi....

Description E-value Query
Range
Subject
Range
gi|16768472 - gi|16768472|gb|AAL28455.1| GM05421p [Drosophila melanogaster]
373.0 [0..1] [336..1]

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Predicted Domain #1
Region A:
Residues: [1-81]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADETSTKTR TMRLGMCEVC AAKEACYACP KCEVKTCSLP CVQIHKKELN CDGQRDRTKF  60
   61 VPLSEMTSRE FMSDYCFLEE C

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 11.69897
Match: 1x4sA
Description: Solution structure of zinc finger HIT domain in protein FON
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [82-336]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TRYAENRKSD PCKRFTHDQR NLPVTQHRMR MAAKKRNINL RLQLENFSRH KENTTYLNWK  60
   61 LGRFHWRIEW LFANIPYEAS LPRNVTRFVD KECNEELTLP DLVAKYVDLR HETAREQRKL 120
  121 LANHQTAGIG QLSFWLRAEG VRRSSTRCYL LDSTKTLAEN LVGKTIVEFP TILVTYDPKP 180
  181 PGGYEAIDSS EEFEEEHEEQ VPVTKPGTSS NAVAEDLDDS HDVYYKLAAA FAGEDVSETE 240
  241 DDEEFEALYR QSVVL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle