YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|220942778
Organism:	synthetic construct
Length:	189 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|220942778.

Description	E-value	Query Range	Subject Range
gi\|195160805, gi... - gi\|195160805\|ref\|XP_002021264.1\| GL25235 [Drosophila persimilis], gi\|194118377\|gb\|EDW40420.1\| GL2523... gi\|54642220, gi\|... - gi\|54642220\|gb\|EAL30969.1\| GA21207 [Drosophila pseudoobscura pseudoobscura], gi\|125978855\|ref\|XP_001... gi\|54642220\|gb\|E... - GA21207-PA [Drosophila pseudoobscura], GA21207 [Drosophila pseudoobscura pseudoobscura]	267.0	[0..1]	[189..1]
gi\|55238292, gi\|... - gi\|58387335\|ref\|XP_315489.2\| AGAP005486-PA [Anopheles gambiae str. PEST], gi\|55238292\|gb\|EAA11140.2\|... AGAP005486-PA - mitochondrial ribosomal protein, L50\|protein_coding\|2L:16132080:16133099:-1\|gene:AGAP005486	261.0	[0..37]	[189..74]
CE03683 - status:Confirmed UniProt:Q22623 protein_id:CAA92691.1	240.0	[0..41]	[188..78]
gi\|39597531, gi\|... - gi\|39597531\|emb\|CAE59761.1\| Hypothetical protein CBG03213 [Caenorhabditis briggsae], gi\|187036789\|em... gi\|157750840 - gi\|157750840\|ref\|XP_001679132.1\| Hypothetical protein CBG03213 [Caenorhabditis briggsae AF16]	238.0	[0..41]	[188..77]
gi\|157821947, gi... - gi\|34868383\|ref\|XP_342836.1\| PREDICTED: similar to mitochondrial ribosomal protein L50 [Rattus norve...	232.0	[0..1]	[146..1]
RM50_MOUSE - 39S ribosomal protein L50, mitochondrial OS=Mus musculus GN=Mrpl50 PE=1 SV=2	229.0	[0..1]	[146..1]
gi\|157137416, gi... - gi\|157137416\|ref\|XP_001663980.1\| mitochondrial ribosomal protein, L50, putative [Aedes aegypti], gi\|...	222.0	[0..18]	[189..54]
gi\|109110757 - gi\|109110757\|ref\|XP_001111283.1\| PREDICTED: similar to mitochondrial ribosomal protein L50 [Macaca m...	212.0	[0..6]	[146..13]

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Predicted Domain #1

Region A:
Residues: [1-189]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAILRKTLI LAGSLHRSFA SAAKAAKAKP VKTSTISAVG ESIAAKGFLR PHKPYSPPAD  60
   61 AAERIRTVAA SLQLKSDQLG NLSEKFEFLN ACFQELQHGV PNSQVHELRT VSDVIAFYQT 120
  121 AVDTTVPFDA LKRIELPENL HIQYEYVRFH PETDTKFDGK TAFPKSSTLV TGLKYRGKYE 180
  181 GHEAKRSWP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits