YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|220964392, gi...
Organism:	Caulobacter crescentus NA1000
Length:	187 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|220964392, gi....

Description	E-value	Query Range	Subject Range
gi\|13473003, gi\|... - gi\|14023751\|dbj\|BAB50356.1\| mll3477 [Mesorhizobium loti MAFF303099], gi\|13473003\|ref\|NP_104570.1\| hy...	250.0	[0..5]	[186..3]
gi\|25352678, gi\|... - pir\|\|AI2991 conserved hypothetical protein Atu3539 [imported] - Agrobacterium tumefaciens (strain C5... gi\|17937246, gi\|... - gi\|17937246\|ref\|NP_534035.1\| hypothetical protein Atu3539 [Agrobacterium tumefaciens str. C58], gi\|1...	247.0	[0..5]	[186..3]
gi\|15075659 - gi\|15075659\|emb\|CAC47214.1\| Conserved hypothetical protein [Sinorhizobium meliloti 1021] gi\|15966388 - gi\|15966388\|ref\|NP_386741.1\| hypothetical protein SMc00737 [Sinorhizobium meliloti 1021]	246.0	[0..5]	[186..3]
gi\|86283469, gi\|... - gi\|86359367\|ref\|YP_471259.1\| putative endonuclease protein [Rhizobium etli CFN 42], gi\|86283469\|gb\|A...	244.0	[0..5]	[186..3]
gi\|115258695, gi... - gi\|116254047\|ref\|YP_769885.1\| putative endonuclease family protein [Rhizobium leguminosarum bv. vici...	244.0	[0..5]	[186..3]
gi\|27376478, gi\|... - gi\|27376478\|ref\|NP_768007.1\| hypothetical protein bll1367 [Bradyrhizobium japonicum USDA 110], gi\|27...	242.0	[0..5]	[186..86]
gi\|113872532, gi... - gi\|113872532\|ref\|ZP_01412661.1\| conserved hypothetical protein [Sinorhizobium medicae WSM419], gi\|11...	242.0	[0..5]	[186..46]
gi\|68193392, gi\|... - gi\|69274952\|ref\|ZP_00610864.1\| HNH endonuclease [Mesorhizobium sp. BNC1], gi\|68193392\|gb\|EAN08044.1\|...	242.0	[0..5]	[186..3]
gi\|78387357, gi\|... - gi\|90422135\|ref\|YP_530505.1\| HNH endonuclease [Rhodopseudomonas palustris BisB18], gi\|90104149\|gb\|AB...	242.0	[0..5]	[186..3]
gi\|62196651, gi\|... - gi\|62290519\|ref\|YP_222312.1\| HNH endonuclease family protein [Brucella abortus bv. 1 str. 9-941], gi... gi\|237816026, gi... - gi\|237816026\|ref\|ZP_04595022.1\| HNH endonuclease family protein [Brucella abortus str. 2308 A], gi\|2... gi\|82700435 - gi\|82700435\|ref\|YP_415009.1\| HNH endonuclease:HNH nuclease [Brucella melitensis biovar Abortus 2308] gi\|254689818 - gi\|254689818\|ref\|ZP_05153072.1\| HNH endonuclease [Brucella abortus bv. 6 str. 870] gi\|82616536 - gi\|82616536\|emb\|CAJ11614.1\| HNH endonuclease:HNH nuclease [Brucella melitensis biovar Abortus 2308] gi\|189024743, gi... - gi\|189024743\|ref\|YP_001935511.1\| HNH endonuclease [Brucella abortus S19], gi\|189020315\|gb\|ACD73037.1... gi\|254697966 - gi\|254697966\|ref\|ZP_05159794.1\| HNH endonuclease [Brucella abortus bv. 2 str. 86/8/59] gi\|254730852 - gi\|254730852\|ref\|ZP_05189430.1\| HNH endonuclease [Brucella abortus bv. 4 str. 292]	241.0	[0..6]	[186..9]

Back

Predicted Domain #1

Region A:
Residues: [1-75]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMQVLTRPPS GMPALVLNAD FRPLSYYPLS LWPWQEVIKA VFLDRVDVVA SYDQVIHSPS  60
   61 CEMRLPSVVA LKQYV

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [76-187]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PQERPPAFTR FNLFLRDSFS CQYCGSPEDL TFDHVIPRSR GGRTTWENIV TACAPCNLSK  60
   61 GGRTPREAGM QPFHTARRPS MYELQERGRR FPPGRLHVSW LDYLYWDIEL EA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	16.0
Match:	2qgpA
Description:	No description for 2qgpA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits