YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|220952386
Organism:	synthetic construct
Length:	191 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|220952386.

Description	E-value	Query Range	Subject Range
MURG_VIBF1 - UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosam...	171.0	[0..1]	[191..1]
MURG_HAES1 - UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosam...	171.0	[0..1]	[191..1]
gi\|91187948, gi\|... - gi\|91228514\|ref\|ZP_01262436.1\| N-acetylglucosaminyl transferase [Vibrio alginolyticus 12G01], gi\|911...	171.0	[0..2]	[191..1]
MURG_PASMU - UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosam... MURG_PASMU - UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosam...	170.0	[0..1]	[191..1]
gi\|84374933, gi\|... - gi\|84394434\|ref\|ZP_00993150.1\| N-acetylglucosaminyl transferase [Vibrio splendidus 12B01], gi\|843749...	170.0	[0..2]	[191..1]
MURG_CALS4 - UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosam... MURG_THETN - UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosam... gi\|223488641, gi... - gi\|254479546\|ref\|ZP_05092863.1\| undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyl...	170.0	[0..7]	[191..2]
MURG_VIBPA - UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosam... MURG_VIBPA - UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosam... gi\|153839053, gi... - gi\|153839053\|ref\|ZP_01991720.1\| undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyl...	169.0	[0..2]	[191..1]
gi\|77962098 - gi\|77962098\|ref\|ZP_00825923.1\| COG0707: UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase ...	168.0	[0..1]	[191..1]
MURG_SHEVD - UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosam... MURG_SHEVI - UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosam...	167.0	[0..1]	[191..1]
MURG_NITEU - UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosam... MURG_NITEU - UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosam...	167.0	[0..9]	[191..1]

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Predicted Domain #1

Region A:
Residues: [1-191]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTSSPHPTY VILGSGGHTA EMCRLTQALL QQTDIEQTEK YQPIRLILAN SDSTSERQFR  60
   61 QVLPQAAQRA EFVKVPRSRD VGQSWLSSIF TSLWALLWSC YLVWRDRPQL ILCNGPGTCV 120
  121 PFCYAAYLWR LLGRLPSHSR IVFVESFCRV ETLSLSGRLL LPLADLFVVH WPALATRYLD 180
  181 KKNVRYFGRI L

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	40.522879
Match:	1f0kA
Description:	Peptidoglycan biosynthesys glycosyltransferase MurG
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits