YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|190659435, gi...
Organism:	Drosophila erecta
Length:	118 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|190659435, gi....

Description	E-value	Query Range	Subject Range
gi\|29145107 - gi\|29145107\|gb\|AAH48547.1\| Cmc1 protein [Mus musculus]	180.0	[0..6]	[118..24]
CE26886 - status:Confirmed UniProt:Q19093 protein_id:AAC46636.2	178.0	[0..7]	[115..38]
gi\|109052667 - gi\|109052667\|ref\|XP_001093525.1\| PREDICTED: similar to CG17996-PA [Macaca mulatta]	175.0	[0..19]	[118..161]
gi\|55619971 - gi\|55619971\|ref\|XP_516338.1\| PREDICTED: hypothetical protein [Pan troglodytes]	173.0	[0..22]	[118..144]
gi\|195147568, gi... - gi\|195147568\|ref\|XP_002014751.1\| GL19339 [Drosophila persimilis], gi\|194106704\|gb\|EDW28747.1\| GL1933... gi\|54644868, gi\|... - gi\|54644868\|gb\|EAL33608.1\| GA14758 [Drosophila pseudoobscura pseudoobscura], gi\|125985561\|ref\|XP_001... gi\|125985561\|ref... - GA14758-PA [Drosophila pseudoobscura], GA14758 [Drosophila pseudoobscura pseudoobscura]	171.0	[0..1]	[118..1]
gi\|157113618, gi... - gi\|157113618\|ref\|XP_001652025.1\| hypothetical protein AaeL_AAEL006521 [Aedes aegypti], gi\|108877671\|...	170.0	[0..12]	[118..20]
gi\|187032149, gi... - gi\|39584947\|emb\|CAE64371.1\| Hypothetical protein CBG09058 [Caenorhabditis briggsae], gi\|187032149\|em... gi\|157773385 - gi\|157773385\|ref\|XP_001664757.1\| hypothetical protein CBG09058 [Caenorhabditis briggsae AF16]	169.0	[0..7]	[115..38]
CMC1 - COX assembly mitochondrial protein homolog (S. cerevisiae)	167.0	[0..19]	[118..4]

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Predicted Domain #1

Region A:
Residues: [1-118]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLEQQPAVD PHNPHGLGDP NDTRLRKVER EVLIPKIMRD RAKTEFCSKE VADFQECCKA  60
   61 SSILMVATCR KQNSALKECL TQWYQNEAFK EECKQIYLQE RADYRSTGIP KKHRLEKL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits