YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|210135322, gi...
Organism:	Helicobacter pylori P12
Length:	63 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|210135322, gi....

Description	E-value	Query Range	Subject Range
gi\|68343595, gi\|... - gi\|70729296\|ref\|YP_259033.1\| cytochrome oxidase maturation protein, cbb3-type-related protein [Pseud...	91.0	[0..3]	[62..1]
gi\|95109933 - gi\|95109933\|emb\|CAK14638.1\| putative cytochrome oxidase maturation protein, cbb3-type CcoS [Pseudomo... gi\|104780946, gi... - gi\|95109933\|emb\|CAK14638.1\| putative cytochrome oxidase maturation protein, cbb3-type CcoS [Pseudomo...	87.0	[0..3]	[55..1]
gi\|77458042, gi\|... - gi\|77458042\|ref\|YP_347547.1\| cytochrome oxidase maturation protein cbb3-type [Pseudomonas fluorescen...	87.0	[0..3]	[59..1]
gi\|148510902, gi... - gi\|148546844\|ref\|YP_001266946.1\| cytochrome oxidase maturation protein, cbb3-type [Pseudomonas putid... tr\|E4RD72\|E4RD72... - CcoS OS=Pseudomonas putida (strain BIRD-1) GN=ccoS PE=4 SV=1 tr\|I7C0J2\|I7C0J2... - Cytochrome oxidase maturation protein, cbb3-type OS=Pseudomonas putida (strain DOT-T1E) GN=T1E_0728 ... gi\|24985976, gi\|... - gi\|26990953\|ref\|NP_746378.1\| cytochrome oxidase maturation protein, cbb3-type [Pseudomonas putida KT...	87.0	[0..3]	[57..1]
gi\|226719030, gi... - gi\|67157350\|ref\|ZP_00418652.1\| Cytochrome oxidase maturation protein cbb3-type [Azotobacter vineland...	84.0	[0..3]	[63..1]
gi\|113872014, gi... - gi\|150377949\|ref\|YP_001314544.1\| cytochrome oxidase maturation protein, cbb3-type [Sinorhizobium med...	83.0	[0..3]	[56..1]
gi\|25505286 - pir\|\|F95302 FixS2 nitrogen fixation protein [imported] - Sinorhizobium meliloti (strain 1021) magapl... gi\|14523410, gi\|... - gi\|16262779\|ref\|NP_435572.1\| FixS2 nitrogen fixation protein [Sinorhizobium meliloti 1021], gi\|14523...	82.0	[0..3]	[56..1]
gi\|83633127, gi\|... - gi\|83645084\|ref\|YP_433519.1\| cytochrome oxidase maturation protein, cbb3-type [Hahella chejuensis KC...	82.0	[0..3]	[62..1]
gi\|28869199, gi\|... - gi\|28869199\|ref\|NP_791818.1\| cytochrome oxidase maturation protein, cbb3-type [Pseudomonas syringae ... tr\|Q884U1\|Q884U1... - Cytochrome oxidase maturation protein, cbb3-type OS=Pseudomonas syringae pv. tomato (strain DC3000) ...	82.0	[0..3]	[55..1]
gi\|34482475 - gi\|34482475\|emb\|CAE09476.1\| hypothetical protein [Wolinella succinogenes] gi\|34556761 - gi\|34556761\|ref\|NP_906576.1\| hypothetical protein WS0326 [Wolinella succinogenes DSM 1740]	81.0	[0..1]	[63..1]

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Predicted Domain #1

Region A:
Residues: [1-63]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTEILTIML VVSVLMGLVG LIAFLWGVKS GQFDDEKRML ESVLYDSASD LNEAILQEKR  60
   61 QKN

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	26.022276
Match:	PF03597.6
Description:	No description for PF03597.6 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits