YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|254478445, gi...
Organism:	Carboxydibrachium pacificum DSM 12653
Length:	242 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|254478445, gi....

Description	E-value	Query Range	Subject Range
gi\|76795471, gi\|... - gi\|76795471\|ref\|ZP_00777844.1\| 5-carboxymethyl-2-hydroxymuconate delta-isomerase [Thermoanaerobacter... gi\|241885014, gi... - gi\|241902552\|ref\|ZP_04787285.1\| 5-carboxymethyl-2-hydroxymuconate Delta-isomerase [Thermoanaerobacte... gi\|166853110, gi... - gi\|167038870\|ref\|YP_001661855.1\| 5-carboxymethyl-2-hydroxymuconate Delta-isomerase [Thermoanaerobact... gi\|242256983, gi... - gi\|242256983\|ref\|ZP_04801862.1\| 5-carboxymethyl-2-hydroxymuconate Delta-isomerase [Thermoanaerobacte...	300.0	[0..1]	[242..1]
gi\|77996639, gi\|... - gi\|78044524\|ref\|YP_360632.1\| fumarylacetoacetate hydrolase family protein [Carboxydothermus hydrogen...	278.0	[0..1]	[242..1]
gi\|110620076, gi... - gi\|147921505\|ref\|YP_684680.1\| fumarylacetoacetate hydrolase family protein [uncultured methanogenic ...	277.0	[0..32]	[240..32]
gi\|20906262, gi\|... - gi\|21227849\|ref\|NP_633771.1\| fumarylacetoacetate hydrolase family protein [Methanosarcina mazei Go1]...	276.0	[0..3]	[241..2]
gi\|109645021, gi... - gi\|68206742\|ref\|ZP_00558923.1\| Fumarylacetoacetate (FAA) hydrolase [Desulfitobacterium hafniense DCB... gi\|89334091, gi\|... - gi\|89894643\|ref\|YP_518130.1\| hypothetical protein DSY1897 [Desulfitobacterium hafniense Y51], gi\|893...	274.0	[0..1]	[242..1]
gi\|15679504, gi\|... - gi\|2622625\|gb\|AAB85982.1\| 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase [Methanothermobacter thermau... gi\|7448783 - pir\|\|A69068 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase - Methanobacterium thermoautotrophicum (st...	274.0	[0..1]	[242..10]
gi\|19914380, gi\|... - gi\|20089474\|ref\|NP_615549.1\| 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase [Methanosarcina acetivora...	273.0	[0..3]	[241..2]
YG56_METJA, Y165... - (Q59050) Hypothetical protein MJ1656, Uncharacterized protein MJ1656 OS=Methanocaldococcus jannaschi... Y1656_METJA - Uncharacterized protein MJ1656 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-...	269.0	[0..43]	[242..35]
gi\|72396152, gi\|... - gi\|73668990\|ref\|YP_305005.1\| 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase [Methanosarcina barkeri s...	267.0	[0..3]	[241..2]
YM25_ARCFU, Y222... - (O28058) Hypothetical protein AF2225, Uncharacterized protein AF_2225 OS=Archaeoglobus fulgidus GN=A... Y2225_ARCFU - Uncharacterized protein AF_2225 OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JC...	267.0	[0..3]	[240..2]

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Predicted Domain #1

Region A:
Residues: [1-242]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRIVRVDKEP DSYGILENDK VILLKEGETF LYGLNEVKLL PPCIPSKAIC VGLNYKDHIE  60
   61 EMGDKIPEEP TLFIKPSTAV IGPDDYIILP EMSRRVDYEG ELAVVIGRKA KNVSIEEAKN 120
  121 YILGYTIAND VTARDLQAKD GQWTRAKSFD TFLPIGPWIV TDLDPTSLNI TTYVNGEVKQ 180
  181 KSNTKYLIFN VFKLVSFISH IMTLNPGDVI LTGTPSGVGP LKSGDVVTIE IEGIGKLTNR 240
  241 VK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	66.221849
Match:	2dfuA
Description:	No description for 2dfuA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits