YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|194130449, gi...
Organism:	Drosophila sechellia
Length:	247 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|194130449, gi....

Description	E-value	Query Range	Subject Range
gi\|157113883, gi... - gi\|157113883\|ref\|XP_001652133.1\| hypothetical protein AaeL_AAEL006611 [Aedes aegypti], gi\|108877571\|...	379.0	[0..1]	[244..1]
gi\|119112432, gi... - gi\|119112432\|ref\|XP_317608.3\| AGAP007885-PA [Anopheles gambiae str. PEST], gi\|116123350\|gb\|EAA12888.... AGAP007885-PA - \|protein_coding\|3R:2468325:2469195:1\|gene:AGAP007885	377.0	[0..1]	[238..1]
gi\|47213595 - gi\|47213595\|emb\|CAG07261.1\| unnamed protein product [Tetraodon nigroviridis]	374.0	[0..3]	[238..5]
gi\|58000444, gi\|... - gi\|58000444\|ref\|NP_001009987.1\| hypothetical protein LOC494496 [Danio rerio], gi\|56789523\|gb\|AAH8838...	374.0	[0..3]	[239..5]
EMC3_RAT - ER membrane protein complex subunit 3 OS=Rattus norvegicus GN=Emc3 PE=2 SV=3 EMC3_MOUSE - ER membrane protein complex subunit 3 OS=Mus musculus GN=Emc3 PE=1 SV=3	373.0	[0..3]	[239..5]
ENSCJAT00000031683 - null gi\|55619789 - gi\|55619789\|ref\|XP_516272.1\| PREDICTED: hypothetical protein isoform 3 [Pan troglodytes] TM111_PONPY - Transmembrane protein 111 - Pongo pygmaeus (Orangutan) tr\|M3WUY6\|M3WUY6... - ER membrane protein complex subunit 3 OS=Felis catus GN=EMC3 PE=3 SV=1 gi\|149728297 - gi\|149728297\|ref\|XP_001494113.1\| PREDICTED: similar to Transmembrane protein 111 [Equus caballus] EMC3_PONAB - ER membrane protein complex subunit 3 OS=Pongo abelii GN=EMC3 PE=2 SV=3 TMEM111 - transmembrane protein 111 gi\|57100904 - gi\|57100904\|ref\|XP_533744.1\| PREDICTED: similar to 30 kDa protein isoform 1 [Canis familiaris]	373.0	[0..3]	[239..5]
gi\|54644377, gi\|... - gi\|54644377\|gb\|EAL33118.1\| GA19832-PA [Drosophila pseudoobscura], gi\|125984590\|ref\|XP_001356059.1\| G...	373.0	[0..1]	[242..1]
EMC3_BOVIN - ER membrane protein complex subunit 3 OS=Bos taurus GN=EMC3 PE=2 SV=3	372.0	[0..3]	[239..5]

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Predicted Domain #1

Region A:
Residues: [1-182]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTELLIDPDI RVWVFLPIVL ITFLVGIVRH YVSILISTQK KAEITQIQDS QAMIRARLLR  60
   61 ENGKYLSAQS FSMRKNYFNN EETGYFKTQK RAPVAQNSSA MLTDMVKGNF INVLPMVVIG 120
  121 GWINWMFSGF VTTKVPFPLT LRFKPMLQRG VELASLDAAW VSSASWYFLN VFGLRSIYTL 180
  181 VL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [183-247]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GENNHADQTQ AQADAMTGAA MTMPQDPKAA FKAEWEALEI TEYHNALKNI DADMLAIASA  60
   61 PAASS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits