YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|214034455, gi...
Organism:	Carboxydibrachium pacificum DSM 12653
Length:	237 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|214034455, gi....

Description	E-value	Query Range	Subject Range
gi\|76797386, gi\|... - gi\|76797386\|ref\|ZP_00779709.1\| OmpA/MotB [Thermoanaerobacter ethanolicus ATCC 33223], gi\|76587252\|gb... gi\|241902659, gi... - gi\|241902659\|ref\|ZP_04787391.1\| OmpA/MotB domain protein [Thermoanaerobacter brockii subsp. finnii A... gi\|242258119, gi... - gi\|242258119\|ref\|ZP_04802952.1\| OmpA/MotB domain protein [Thermoanaerobacter sp. X513], gi\|242230369... gi\|114845267, gi... - gi\|167039156\|ref\|YP_001662141.1\| OmpA/MotB domain-containing protein [Thermoanaerobacter sp. X514], ...	221.0	[0..1]	[237..1]
gi\|78043824, gi\|... - gi\|78043824\|ref\|YP_359811.1\| flagellar motor protein MotB [Carboxydothermus hydrogenoformans Z-2901]...	211.0	[0..1]	[236..1]
gi\|15893597, gi\|... - gi\|15893597\|ref\|NP_346946.1\| chemotaxis motility protein B, gene motB [Clostridium acetobutylicum AT... gi\|25332313 - pir\|\|C96937 chemotaxis motility protein B, gene motB [imported] - Clostridium acetobutylicum	201.0	[0..1]	[236..1]
gi\|220932514, gi... - gi\|89211365\|ref\|ZP_01189734.1\| OmpA/MotB [Halothermothrix orenii H 168], gi\|89159054\|gb\|EAR78733.1\| ...	200.0	[0..2]	[235..3]
gi\|134052981, gi... - gi\|88945346\|ref\|ZP_01148523.1\| Flagellar motor protein [Desulfotomaculum reducens MI-1], gi\|88925021...	198.0	[0..1]	[236..1]
gi\|255313486 - gi\|255313486\|ref\|ZP_05355069.1\| putative chemotaxis protein [Clostridium difficile QCD-76w55] gi\|255516174 - gi\|255516174\|ref\|ZP_05383850.1\| putative chemotaxis protein [Clostridium difficile QCD-97b34] gi\|255649270 - gi\|255649270\|ref\|ZP_05396172.1\| putative chemotaxis protein [Clostridium difficile QCD-37x79] gi\|119636930, gi... - gi\|90575810\|ref\|ZP_01232286.1\| hypothetical protein CdifQ_02000771 [Clostridium difficile QCD-32g58]... gi\|254974362 - gi\|254974362\|ref\|ZP_05270834.1\| putative chemotaxis protein [Clostridium difficile QCD-66c26] gi\|255091756 - gi\|255091756\|ref\|ZP_05321234.1\| putative chemotaxis protein [Clostridium difficile CIP 107932]	195.0	[0..14]	[233..14]
gi\|115249762, gi... - gi\|126698325\|ref\|YP_001087222.1\| putative chemotaxis protein [Clostridium difficile 630], gi\|1152497...	194.0	[0..14]	[233..16]
gi\|25332308 - pir\|\|G84054 hypothetical protein BH3239 [imported] - Bacillus halodurans (strain C-125) gi\|15615801, gi\|... - gi\|15615801\|ref\|NP_244105.1\| flagellar motor protein MotS [Bacillus halodurans C-125], gi\|10175862\|d...	194.0	[0..1]	[231..1]
gi\|98662205, gi\|... - gi\|98662205\|dbj\|GAA00756.1\| unnamed protein product [Pelotomaculum thermopropionicum SI], gi\|1476784...	194.0	[0..1]	[236..2]
gi\|83572237, gi\|... - gi\|83589323\|ref\|YP_429332.1\| OmpA/MotB [Moorella thermoacetica ATCC 39073], gi\|83572237\|gb\|ABC18789....	193.0	[0..1]	[234..3]

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Predicted Domain #1

Region A:
Residues: [1-96]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRLEDESKP NHERWLLTYS DMITLLLIFF IVMYTMSTLN AAKFAQLAGS LSKTFTGTNY  60
   61 ILGKYSGKSV VPGNAENKDN LGEVQAQLQA FIKESN

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [97-237]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LQGMVSTYRD ERGLVVSLQD TLLFDLGSAD VHPEEKEVLI KIGKMLKNLP NYIRVEGFTD  60
   61 DLPIHNQKFD SNWELSVIRA TTVVKILVNE VGIEPQRISA VGYGEYRPIV PNDSEEHRRL 120
  121 NRRVDIVIMN TEYNKWEPKT Q

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	20.39794
Match:	2hqsH
Description:	No description for 2hqsH was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits