YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|195941364
Organism:	Borrelia burgdorferi 80a
Length:	74 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|195941364.

Description	E-value	Query Range	Subject Range
gi\|67986433, gi\|... - gi\|69287648\|ref\|ZP_00617979.1\| Flagellar [Kineococcus radiotolerans SRS30216], gi\|67986433\|gb\|EAM742...	108.0	[0..2]	[74..65]
gi\|7462780 - pir\|\|A72347 hypothetical protein TM0675 - Thermotoga maritima (strain MSB8) gi\|15643439, gi\|... - gi\|4981198\|gb\|AAD35758.1\|AE001740_4 flagellar protein, putative [Thermotoga maritima MSB8], gi\|15643...	108.0	[0..1]	[66..1]
gi\|1185052 - gi\|1185052\|gb\|AAB58961.1\| motility protein	107.0	[0..1]	[74..1]
gi\|215979783, gi... - gi\|216263739\|ref\|ZP_03435733.1\| conserved domain protein [Borrelia afzelii ACA-1], gi\|215979783\|gb\|E... gi\|224534305, gi... - gi\|224534305\|ref\|ZP_03674883.1\| conserved domain protein [Borrelia spielmanii A14S], gi\|224514407\|gb... gi\|110890381, gi... - gi\|111115107\|ref\|YP_709725.1\| flagellar protein [Borrelia afzelii PKo], gi\|110890381\|gb\|ABH01549.1\| ...	103.0	[0..1]	[74..1]
gi\|1399284 - gi\|1399284\|gb\|AAB03249.1\| orf4; initiates with GTG	102.0	[0..1]	[65..1]
gi\|51573113, gi\|... - gi\|51598542\|ref\|YP_072730.1\| flagellar protein [Borrelia garinii PBi], gi\|51573113\|gb\|AAU07138.1\| fl...	101.0	[0..1]	[74..1]
gi\|3323027, gi\|1... - gi\|3323027\|gb\|AAC65691.1\| flagellar protein (flbD) [Treponema pallidum subsp. pallidum str. Nichols]... gi\|7521072 - pir\|\|B71292 probable flagellar protein (flbD) - syphilis spirochete gi\|2196894 - gi\|2196894\|gb\|AAB61252.1\| Orf4 [Treponema pallidum] gi\|189025951, gi... - gi\|189025951\|ref\|YP_001933723.1\| flagellar protein [Treponema pallidum subsp. pallidum SS14], gi\|189...	100.0	[0..1]	[64..1]
gi\|4426944 - gi\|4426944\|gb\|AAD20618.1\| unknown [Treponema denticola] gi\|41819537, gi\|... - gi\|42528267\|ref\|NP_973365.1\| flagellar protein-related protein [Treponema denticola ATCC 35405], gi\|...	99.0	[0..1]	[65..1]
gi\|23113770, gi\|... - gi\|68207712\|ref\|ZP_00559864.1\| Flagellar [Desulfitobacterium hafniense DCB-2], gi\|68168406\|gb\|EAM963... gi\|89895730, gi\|... - gi\|89895730\|ref\|YP_519217.1\| hypothetical protein DSY2984 [Desulfitobacterium hafniense Y51], gi\|893...	97.0	[0..1]	[67..1]
gi\|39998117, gi\|... - gi\|39998117\|ref\|NP_954068.1\| flagellar protein FlbD, putative [Geobacter sulfurreducens PCA], gi\|399...	94.0	[0..1]	[70..1]

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Predicted Domain #1

Region A:
Residues: [1-74]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIFVTKLNGD GYYLNPYHIE SIEANPDTTI LLMNGKKLIV KEKVEEVVNR IKLYRKEVAS  60
   61 LEKILGEGNG GVEL

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	39.086186
Match:	PF06289.2
Description:	No description for PF06289.2 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.627	N/A	N/A	d.58.7	RNA-binding domain, RBD
View	Download	0.534	N/A	N/A	d.50.1	dsRNA-binding domain-like
View	Download	0.527	N/A	N/A	d.58.7	RNA-binding domain, RBD
View	Download	0.525	N/A	N/A	d.186.1	Head-to-tail joining protein W, gpW
View	Download	0.525	N/A	N/A	d.186.1	Head-to-tail joining protein W, gpW
View	Download	0.507	N/A	N/A	d.50.1	dsRNA-binding domain-like
View	Download	0.475	N/A	N/A	a.2.5	Prefoldin
View	Download	0.441	N/A	N/A	d.76.1	GYF domain
View	Download	0.430	N/A	N/A	d.58.7	RNA-binding domain, RBD
View	Download	0.427	N/A	N/A	g.41.6	Hypothetical protein MTH1184

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits