YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|170176519, gi...
Organism:	Thermotoga sp. RQ2
Length:	90 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|170176519, gi....

Description	E-value	Query Range	Subject Range
gi\|57641932, gi\|... - gi\|57641932\|ref\|YP_184410.1\| hydrogenase maturation protein HypF [Thermococcus kodakarensis KOD1], g...	129.0	[0..1]	[87..1]
gi\|18892549, gi\|... - gi\|18976931\|ref\|NP_578288.1\| hydrogenase expression/formation regulatory protein [Pyrococcus furiosu...	127.0	[0..1]	[87..7]
gi\|7449700, gi\|5... - pir\|\|D75031 hydrogenase expression/formation regulatory protein (hypf) PAB1560 - Pyrococcus abyssi (... gi\|5458658, gi\|1... - gi\|5458658\|emb\|CAB50145.1\| hypF hydrogenase expression/formation regulatory protein [Pyrococcus abys...	122.0	[0..1]	[87..1]
gi\|3257308, gi\|1... - gi\|3257308\|dbj\|BAA29991.1\| 773aa long hypothetical transcriptional regulatory protein hypF [Pyrococc... gi\|7449701 - pir\|\|A71079 probable transcription regulatory protein hypF - Pyrococcus horikoshii	122.0	[0..1]	[87..1]
gi\|114552925, gi... - gi\|114776839\|ref\|ZP_01451882.1\| Acylphosphatase [Mariprofundus ferrooxydans PV-1], gi\|114552925\|gb\|E...	118.0	[0..1]	[87..1]
gi\|67853729, gi\|... - gi\|67924417\|ref\|ZP_00517844.1\| Hydrogenase maturation protein HypF [Crocosphaera watsonii WH 8501], ...	118.0	[0..3]	[89..6]
ACYP_ANAVT - Acylphosphatase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=acyP PE=3 SV=1	115.0	[0..3]	[88..12]

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Predicted Domain #1

Region A:
Residues: [1-90]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKALKIRVEG IVQGVGFRYF TRRVAKSLGV KGYVMNMDDG SVFIHAEGDE NALRRFLNEV  60
   61 AKGPPAAVVT NVSVEETTPE GYEDFTIKYY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.09691
Match:	1v3zA
Description:	Crystal Structure of Acylphosphatase from Pyrococcus horikoshii
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.52035558898316	bayes_pls_golite062009
hydrolase activity	0.242727026146951	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: