YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|220948972, gi...
Organism:	synthetic construct
Length:	160 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|220948972, gi....

Description	E-value	Query Range	Subject Range
gi\|109471287 - gi\|109471287\|ref\|XP_001071391.1\| PREDICTED: similar to Protein SYS1 homolog [Rattus norvegicus]	239.0	[0..3]	[156..102]
gi\|109091951 - gi\|109091951\|ref\|XP_001109290.1\| PREDICTED: similar to SCF apoptosis response protein 1 isoform 2 [M...	232.0	[0..3]	[156..98]
gi\|114682335 - gi\|114682335\|ref\|XP_514675.2\| PREDICTED: hypothetical protein [Pan troglodytes]	231.0	[0..3]	[156..122]
gi\|14270398 - gi\|14270398\|emb\|CAC39448.1\| hypothetical protein [Homo sapiens]	228.0	[0..3]	[156..40]
SYS1_MOUSE - Protein SYS1 homolog OS=Mus musculus GN=Sys1 PE=2 SV=1 gi\|149042951, gi... - gi\|149042951\|gb\|EDL96525.1\| rCG32134, isoform CRA_a [Rattus norvegicus], gi\|149042949\|gb\|EDL96523.1\|...	216.0	[0..3]	[156..2]
SYS1_BOVIN - Protein SYS1 homolog OS=Bos taurus GN=SYS1 PE=2 SV=1	213.0	[0..3]	[156..2]
gi\|148223235, gi... - gi\|27469691\|gb\|AAH41757.1\| MGC53635 protein [Xenopus laevis], gi\|148223235\|ref\|NP_001079422.1\| hypot...	210.0	[0..3]	[156..2]

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Predicted Domain #1

Region A:
Residues: [1-160]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKGGTFRNTQ WDPTLLSSQI VSMQFCVYFT LGLLVFVANK LSGDNYSLDH LFEYHEIHIY  60
   61 DMGGRLVICA FVLNAFLASL ALWCIVRRAK LCLDFSCTFH VLHLLICWWY NRSFPANASW 120
  121 WLLNVITGTI MCIGGEFLCL QTEMKEIPVG YAALNQKSDV

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits