YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|220959068, gi...
Organism:	synthetic construct
Length:	202 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|220959068, gi....

Description	E-value	Query Range	Subject Range
gi\|20807038 - gi\|20807038\|ref\|NP_622209.1\| Acetyltransferase [Thermoanaerobacter tengcongensis MB4] gi\|20807038, gi\|... - gi\|20807038\|ref\|NP_622209.1\| acetyltransferase [Thermoanaerobacter tengcongensis MB4], gi\|20515525\|g...	132.0	[0..39]	[198..1]
gi\|39593048, gi\|... - gi\|39593048\|emb\|CAE64517.1\| Hypothetical protein CBG09255 [Caenorhabditis briggsae], gi\|187031999\|em... gi\|157763894 - gi\|157763894\|ref\|XP_001674290.1\| Hypothetical protein CBG09255 [Caenorhabditis briggsae AF16]	127.0	[0..13]	[202..6]
gi\|125773023, gi... - gi\|54637503\|gb\|EAL26905.1\| GA20464-PA [Drosophila pseudoobscura], gi\|125773023\|ref\|XP_001357770.1\| G...	127.0	[0..1]	[199..1]
gi\|167039151, gi... - gi\|167039151\|ref\|YP_001662136.1\| ribosomal-protein-alanine acetyltransferase [Thermoanaerobacter sp.... gi\|76797381, gi\|... - gi\|76797381\|ref\|ZP_00779704.1\| Ribosomal-protein-alanine acetyltransferase [Thermoanaerobacter ethan... gi\|241884906, gi... - gi\|241902652\|ref\|ZP_04787384.1\| ribosomal-protein-alanine acetyltransferase [Thermoanaerobacter broc... gi\|242230040, gi... - gi\|242258437\|ref\|ZP_04803241.1\| ribosomal-protein-alanine acetyltransferase [Thermoanaerobacter sp. ...	125.0	[0..41]	[198..2]
gi\|219992356, gi... - gi\|89210568\|ref\|ZP_01188956.1\| Ribosomal-protein-alanine acetyltransferase [Halothermothrix orenii H...	119.0	[0..47]	[200..3]
gi\|14521872, gi\|... - gi\|5459092\|emb\|CAB50578.1\| N-terminal acetyltransferase [Pyrococcus abyssi GE5], gi\|14521872\|ref\|NP_... gi\|5459092, gi\|7... - pir\|\|D75017 n-terminal acetyltransferase PAB1098 - Pyrococcus abyssi (strain Orsay), gi\|5459092\|emb...	116.0	[0..40]	[199..13]
CE28976 - status:Partially_confirmed UniProt:Q95X11 protein_id:AAK95886.1	115.0	[0..13]	[202..36]
gi\|78044332, gi\|... - gi\|78044332\|ref\|YP_359578.1\| ribosomal-protein-alanine acetyltransferase [Carboxydothermus hydrogeno...	114.0	[0..52]	[200..1]
gi\|14590218, gi\|... - gi\|3256685\|dbj\|BAA29368.1\| 172aa long hypothetical acetyltransferase [Pyrococcus horikoshii OT3], gi... gi\|7451125 - pir\|\|A71455 probable acetyltransferase - Pyrococcus horikoshii	114.0	[0..40]	[199..13]
gi\|255515613 - gi\|255515613\|ref\|ZP_05383289.1\| putative ribosomal-protein-alanine acetyltransferase [Clostridium di... gi\|255648707 - gi\|255648707\|ref\|ZP_05395609.1\| putative ribosomal-protein-alanine acetyltransferase [Clostridium di... gi\|145956070, gi... - gi\|90576237\|ref\|ZP_01232702.1\| hypothetical protein CdifQ_02000170 [Clostridium difficile QCD-32g58]... gi\|254973810 - gi\|254973810\|ref\|ZP_05270282.1\| putative ribosomal-protein-alanine acetyltransferase [Clostridium di... gi\|255091197 - gi\|255091197\|ref\|ZP_05320675.1\| putative ribosomal-protein-alanine acetyltransferase [Clostridium di... gi\|255312854 - gi\|255312854\|ref\|ZP_05354437.1\| putative ribosomal-protein-alanine acetyltransferase [Clostridium di...	113.0	[0..38]	[200..3]

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Predicted Domain #1

Region A:
Residues: [1-202]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRNQDDLSQG AKQRFVETAA RAKNPLESLS YQSYKAPSGE EFKLICRAKS DADSKLLKWA  60
   61 FKLAETNVGP YYKQLKMGWQ PKIKAAELNK NWARYLVAQN EKKENVAYAM FRFDMDHGDC 120
  121 VLYCYEMQVA AEYRRKGLGK FIMSTLEDCA RLWHLEKVML TVLNNNEASI SFFKQLGYVK 180
  181 DEISPDVLEQ ADYQIFSKSM LS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	21.09691
Match:	1yr0A
Description:	Crystal structure of phosphinothricin acetyltransferase from agrobacterium tumefaciens
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.80717089094108	bayes_pls_golite062009
transferase activity	1.70550990165061	bayes_pls_golite062009
N-acyltransferase activity	1.32958400692204	bayes_pls_golite062009
N-acetyltransferase activity	1.18612587745848	bayes_pls_golite062009
acetyltransferase activity	1.02322587046875	bayes_pls_golite062009
transferase activity, transferring acyl groups	0.514005279691286	bayes_pls_golite062009
transferase activity, transferring acyl groups other than amino-acyl groups	0.462080003433853	bayes_pls_golite062009
acyltransferase activity	0.450499160000604	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: