YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|194189353, gi...
Organism:	Drosophila yakuba
Length:	212 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|194189353, gi....

Description	E-value	Query Range	Subject Range
gi\|194108511, gi... - gi\|195168494\|ref\|XP_002025066.1\| GL26783 [Drosophila persimilis], gi\|194108511\|gb\|EDW30554.1\| GL2678... gi\|54643928, gi\|... - gi\|54643928\|gb\|EAL32671.1\| GA15311 [Drosophila pseudoobscura pseudoobscura], gi\|125983694\|ref\|XP_001... gi\|54643928\|gb\|E... - GA15311-PA [Drosophila pseudoobscura], GA15311 [Drosophila pseudoobscura pseudoobscura]	254.0	[0..4]	[212..1]
gi\|27374369 - gi\|27374369\|gb\|AAO01108.1\| CG2222-PA [Drosophila willistoni]	248.0	[0..4]	[205..1]
gi\|166796963, gi... - gi\|62859339\|ref\|NP_001016123.1\| hypothetical protein LOC548877 [Xenopus (Silurana) tropicalis], gi\|1...	238.0	[0..3]	[191..11]
gi\|76779920, gi\|... - gi\|76779920\|gb\|AAI06315.1\| Flj13912 protein [Xenopus laevis], gi\|29365483\|dbj\|BAC66460.1\| Psf3 [Xeno...	237.0	[0..3]	[191..11]
GINS3 - GINS complex subunit 3 (Psf3 homolog)	236.0	[0..4]	[198..13]
gi\|55643959 - gi\|55643959\|ref\|XP_511004.1\| PREDICTED: GINS complex subunit 3 (Psf3 homolog) isoform 2 [Pan troglod...	236.0	[0..4]	[198..13]
PSF3_MOUSE - DNA replication complex GINS protein PSF3 OS=Mus musculus GN=Gins3 PE=2 SV=1	235.0	[0..4]	[198..13]
gi\|55726581 - gi\|55726581\|emb\|CAH90057.1\| hypothetical protein [Pongo abelii] PSF3_PONAB - DNA replication complex GINS protein PSF3 OS=Pongo abelii GN=GINS3 PE=2 SV=1	235.0	[0..4]	[198..13]
CCDS10796.1_1 - null gi\|109128723 - gi\|109128723\|ref\|XP_001101868.1\| PREDICTED: similar to Y65B4BR.8 isoform 2 [Macaca mulatta]	235.0	[0..4]	[198..13]
gi\|73950325 - gi\|73950325\|ref\|XP_544380.2\| PREDICTED: similar to Y65B4BR.8 [Canis familiaris]	233.0	[0..4]	[197..13]

Back

Predicted Domain #1

Region A:
Residues: [1-212]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNGMNYFPNY YSIEDIFVTQ EKVECRVNTK LQRMGFLDSG AESDDLEPGR TVNLPLWYIK  60
   61 ELKVNNAYFT VAVPDIYRNV HKAVCEAETT HIELGRLHPY FYEFGRYLTP YDRNHVIGRI 120
  121 IFETLRQRVR HLLDISKSDG QAAKAEHRLD NIEAKLHEAG VRTNSQYIEW LQMTGNKIRT 180
  181 SELVEEHQKK RRRADRSDDE GDALPNSKRA TL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	63.221849
Match:	2q9qD
Description:	No description for 2q9qD was found.

Predicted functions:

Term	Confidence	Notes
3'-5' DNA helicase activity	0.71044855814709	bayes_pls_golite062009
binding	0.510070128812714	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: