YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|221234785, gi...
Organism:	Caulobacter crescentus NA1000
Length:	129 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|221234785, gi....

Description	E-value	Query Range	Subject Range
gi\|114536608, gi... - gi\|114707979\|ref\|ZP_01440871.1\| Prokaryotic Cytochrome C oxidase subunit IV [Fulvimarina pelagi HTCC...	144.0	[0..2]	[127..6]
gi\|33593692, gi\|... - gi\|33593692\|ref\|NP_881336.1\| cytochrome ubiquinol oxidase subunit IV [Bordetella pertussis Tohama I]... gi\|33565846 - gi\|33565846\|emb\|CAE36392.1\| cytochrome ubiquinol oxidase subunit IV [Bordetella parapertussis] gi\|33595767 - gi\|33595767\|ref\|NP_883410.1\| cytochrome ubiquinol oxidase subunit IV [Bordetella parapertussis 12822... gi\|33600293, gi\|... - gi\|33600293\|ref\|NP_887853.1\| cytochrome ubiquinol oxidase subunit IV [Bordetella bronchiseptica RB50...	142.0	[0..2]	[129..5]
gi\|113529472, gi... - gi\|116694973\|ref\|YP_729184.1\| bo3-type chinol oxidase, subunit IV [Ralstonia eutropha H16], gi\|11352...	131.0	[0..1]	[124..1]
gi\|47575650 - gi\|47575650\|ref\|ZP_00245685.1\| COG3125: Heme/copper-type cytochrome/quinol oxidase, subunit 4 [Rubri... gi\|124266931, gi... - gi\|124266931\|ref\|YP_001020935.1\| cytochrome ubiquinol oxidase subunit IV [Methylibium petroleiphilum...	131.0	[0..9]	[129..7]
gi\|25331182 - pir\|\|AD3489 cytochrome o ubiquinol oxidase operon protein cyod [imported] - Brucella melitensis (str... gi\|17983942, gi\|... - gi\|17988181\|ref\|NP_540815.1\| cytochrome O ubiquinol oxidase operon protein CYOD [Brucella melitensis...	127.0	[0..14]	[129..32]
gi\|1773113 - gi\|1773113\|gb\|AAB40185.1\| cytochrome o ubiquinol oxidase C subunit [Escherichia coli]	125.0	[0..13]	[118..30]
gi\|115511813, gi... - gi\|117622689\|ref\|YP_851602.1\| cytochrome o ubiquinol oxidase subunit IV [Escherichia coli APEC O1], ...	125.0	[0..13]	[118..30]
gi\|48768392, gi\|... - gi\|94314709\|ref\|YP_587918.1\| cytochrome C oxidase subunit IV [Ralstonia metallidurans CH34], gi\|9335...	124.0	[0..14]	[129..5]
gi\|25331180 - pir\|\|AE2593 cytochrome o ubiquinol oxidase subunit IV cyoD [imported] - Agrobacterium tumefaciens (s... gi\|159184177, gi... - gi\|17934057\|ref\|NP_530847.1\| cytochrome o ubiquinol oxidase subunit IV [Agrobacterium tumefaciens st...	124.0	[0..21]	[129..22]

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Predicted Domain #1

Region A:
Residues: [1-129]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAASHDAHP HDEHGDAHEA AHGTLKDYVI GFVLAVILTA IPFWLVMGDV LPSAQMTAVA  60
   61 VMGLAVIQVV VHMIYFLHMN TRSEGGWTML ALIFTLILVV ITLAGSLWVM HNLNTHMMPE 120
  121 MMPDMRQAP

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	48.040959
Match:	PF03626.5
Description:	No description for PF03626.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits