YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|220949222
Organism:	synthetic construct
Length:	218 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|220949222.

Description	E-value	Query Range	Subject Range
gi\|113547541, gi... - gi\|215697298\|dbj\|BAG91292.1\| unnamed protein product [Oryza sativa Japonica Group], gi\|115450939\|ref... gi\|125542540 - gi\|125542540\|gb\|EAY88679.1\| hypothetical protein OsI_10154 [Oryza sativa Indica Group]	236.0	[0..2]	[214..8]
VA726_ARATH - Putative vesicle-associated membrane protein 726 OS=Arabidopsis thaliana GN=VAMP726 PE=2 SV=2	236.0	[0..2]	[215..5]
gi\|74009232 - gi\|74009232\|ref\|XP_855489.1\| PREDICTED: similar to Synaptobrevin-like protein 1 [Canis familiaris]	228.0	[0..1]	[218..112]

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Predicted Domain #1

Region A:
Residues: [1-117]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPILYSVISR GTTVLAKFAE CVGNFAEVTE HIIGRIGVHN HKMTYTHGDY LIHYTCENKL  60
   61 VYMCITDNEF ERSRAFLFLA DIKQKFIQTY GLQVATAIAY SMNTEFSKIL AQQMVYF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.39794
Match:	2dmwA
Description:	No description for 2dmwA was found.

Predicted Domain #2

Region A:
Residues: [118-218]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SQSREVDTIS RVHGQIDELK DIMVKNIDSL RDRGEKLELL VNKTENLSNN SVAFRKASRN  60
   61 LARQMFWKNI RVYVVVGLVI TFIVYVIVSM ACGGLAWQSC V

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	18.522879
Match:	1sfcA
Description:	Synaptobrevin
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits